Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d11
         (746 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y15895-1|CAA75816.1| 1008|Drosophila melanogaster ubiquitin acti...   193   2e-49
AY069191-1|AAL39336.1| 1191|Drosophila melanogaster GH24511p pro...   193   2e-49
AE013599-908|AAF58910.2| 1191|Drosophila melanogaster CG1782-PA ...   193   2e-49
BT016111-1|AAV36996.1| 1049|Drosophila melanogaster LD11955p pro...    30   2.9  
BT001657-1|AAN71412.1|  773|Drosophila melanogaster RE45289p pro...    30   2.9  
BT001586-1|AAN71341.1|  527|Drosophila melanogaster RE26413p pro...    30   2.9  
AY070958-1|AAL48580.1|  773|Drosophila melanogaster RE05926p pro...    30   2.9  
AE014297-3735|AAF56414.2|  773|Drosophila melanogaster CG10244-P...    30   2.9  
AE014134-3020|AAF53743.1| 1049|Drosophila melanogaster CG17492-P...    30   2.9  

>Y15895-1|CAA75816.1| 1008|Drosophila melanogaster ubiquitin
            activating enzyme protein.
          Length = 1008

 Score =  193 bits (471), Expect = 2e-49
 Identities = 87/126 (69%), Positives = 104/126 (82%)
 Frame = -1

Query: 662  STLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQ 483
            + LALPF  FSEP+  + NTY   +WTLWDRFEV GE++LQ+FL++F+   KL+ITMLSQ
Sbjct: 883  ANLALPFMAFSEPLPAAKNTYYGKEWTLWDRFEVTGELSLQEFLNYFEENEKLKITMLSQ 942

Query: 482  GVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPY 303
            GV MLYSFFMPKAK  ERL LPMSEVV +VSK++LEPH  +LVFE+CCND DG DVEVPY
Sbjct: 943  GVSMLYSFFMPKAKCSERLPLPMSEVVRRVSKRRLEPHERSLVFEICCNDVDGEDVEVPY 1002

Query: 302  VKYTLP 285
            V+YTLP
Sbjct: 1003 VRYTLP 1008


>AY069191-1|AAL39336.1| 1191|Drosophila melanogaster GH24511p protein.
          Length = 1191

 Score =  193 bits (471), Expect = 2e-49
 Identities = 87/126 (69%), Positives = 104/126 (82%)
 Frame = -1

Query: 662  STLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQ 483
            + LALPF  FSEP+  + NTY   +WTLWDRFEV GE++LQ+FL++F+   KL+ITMLSQ
Sbjct: 1066 ANLALPFMAFSEPLPAAKNTYYGKEWTLWDRFEVTGELSLQEFLNYFEENEKLKITMLSQ 1125

Query: 482  GVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPY 303
            GV MLYSFFMPKAK  ERL LPMSEVV +VSK++LEPH  +LVFE+CCND DG DVEVPY
Sbjct: 1126 GVSMLYSFFMPKAKCSERLPLPMSEVVRRVSKRRLEPHERSLVFEICCNDVDGEDVEVPY 1185

Query: 302  VKYTLP 285
            V+YTLP
Sbjct: 1186 VRYTLP 1191



 Score = 33.9 bits (74), Expect = 0.24
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 744  VXAGLVCLELYKLAQGFNKLEVFKNGFVNLGPALLRF 634
            V +GL  LE+ KL  G   L  FKNGF NL    + F
Sbjct: 1039 VLSGLAVLEVIKLIVGHRDLVKFKNGFANLALPFMAF 1075


>AE013599-908|AAF58910.2| 1191|Drosophila melanogaster CG1782-PA
            protein.
          Length = 1191

 Score =  193 bits (471), Expect = 2e-49
 Identities = 87/126 (69%), Positives = 104/126 (82%)
 Frame = -1

Query: 662  STLALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHKLEITMLSQ 483
            + LALPF  FSEP+  + NTY   +WTLWDRFEV GE++LQ+FL++F+   KL+ITMLSQ
Sbjct: 1066 ANLALPFMAFSEPLPAAKNTYYGKEWTLWDRFEVTGELSLQEFLNYFEENEKLKITMLSQ 1125

Query: 482  GVCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPY 303
            GV MLYSFFMPKAK  ERL LPMSEVV +VSK++LEPH  +LVFE+CCND DG DVEVPY
Sbjct: 1126 GVSMLYSFFMPKAKCSERLPLPMSEVVRRVSKRRLEPHERSLVFEICCNDVDGEDVEVPY 1185

Query: 302  VKYTLP 285
            V+YTLP
Sbjct: 1186 VRYTLP 1191



 Score = 33.9 bits (74), Expect = 0.24
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = -3

Query: 744  VXAGLVCLELYKLAQGFNKLEVFKNGFVNLGPALLRF 634
            V +GL  LE+ KL  G   L  FKNGF NL    + F
Sbjct: 1039 VLSGLAVLEVIKLIVGHRDLVKFKNGFANLALPFMAF 1075


>BT016111-1|AAV36996.1| 1049|Drosophila melanogaster LD11955p
           protein.
          Length = 1049

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 353 FELC--CNDDDGNDVEVPYVKYTLP*SI*CDLEPSQSGAEK 237
           + LC  C  +D +D+E P+++YT P S+   L P + GA++
Sbjct: 108 YHLCAYCYAEDLHDIEHPFIRYTTPNSLGVRL-PMRKGAKR 147


>BT001657-1|AAN71412.1|  773|Drosophila melanogaster RE45289p
           protein.
          Length = 773

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 KKLEPHVNALVFELCCNDDDGNDVEVPYV 300
           K LEPH+N +    CC D D   V + YV
Sbjct: 526 KSLEPHINVVHLLGCCTDKDPTFVILEYV 554


>BT001586-1|AAN71341.1|  527|Drosophila melanogaster RE26413p
           protein.
          Length = 527

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 KKLEPHVNALVFELCCNDDDGNDVEVPYV 300
           K LEPH+N +    CC D D   V + YV
Sbjct: 280 KSLEPHINVVHLLGCCTDKDPTFVILEYV 308


>AY070958-1|AAL48580.1|  773|Drosophila melanogaster RE05926p
           protein.
          Length = 773

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 KKLEPHVNALVFELCCNDDDGNDVEVPYV 300
           K LEPH+N +    CC D D   V + YV
Sbjct: 526 KSLEPHINVVHLLGCCTDKDPTFVILEYV 554


>AE014297-3735|AAF56414.2|  773|Drosophila melanogaster CG10244-PA
           protein.
          Length = 773

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -1

Query: 386 KKLEPHVNALVFELCCNDDDGNDVEVPYV 300
           K LEPH+N +    CC D D   V + YV
Sbjct: 526 KSLEPHINVVHLLGCCTDKDPTFVILEYV 554


>AE014134-3020|AAF53743.1| 1049|Drosophila melanogaster CG17492-PA
           protein.
          Length = 1049

 Score = 30.3 bits (65), Expect = 2.9
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -1

Query: 353 FELC--CNDDDGNDVEVPYVKYTLP*SI*CDLEPSQSGAEK 237
           + LC  C  +D +D+E P+++YT P S+   L P + GA++
Sbjct: 108 YHLCAYCYAEDLHDIEHPFIRYTTPNSLGVRL-PMRKGAKR 147


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,606,043
Number of Sequences: 53049
Number of extensions: 677360
Number of successful extensions: 1556
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1551
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3396574665
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)