Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d11
         (746 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical p...   126   2e-29
Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical p...   126   2e-29
Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical pr...    29   4.6  
L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical pr...    28   8.1  

>Z68882-19|CAJ30225.1| 1028|Caenorhabditis elegans Hypothetical
            protein C47E12.5b protein.
          Length = 1028

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/123 (46%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
 Frame = -1

Query: 656  LALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHK-LEITMLSQG 480
            L++PFF  +EPI     TY + ++TLWDR +V+G +TLQ+F+D+ +N+    E++MLS G
Sbjct: 905  LSMPFFSSAEPIGAPKKTYMDREFTLWDRIDVQGPLTLQEFIDNVQNQTGGCEVSMLSAG 964

Query: 479  VCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 300
             C+L+SFFM   K+ ERL   +  V  ++ KK L P V+ALV E   +D DG DVEVPY+
Sbjct: 965  ACLLFSFFMNAGKKQERLKTEVKAVYEELLKKSLHPSVHALVLEPMMSDPDGEDVEVPYI 1024

Query: 299  KYT 291
            +Y+
Sbjct: 1025 RYS 1027



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
 Frame = -3

Query: 738 AGLVCLELYKL--AQGFNK--LEVFKNGFVNL 655
           AGLVC+ELYK+  A G  K  +E FKN F+NL
Sbjct: 874 AGLVCIELYKVVDANGIPKTPMERFKNTFLNL 905


>Z68882-18|CAA93101.1| 1113|Caenorhabditis elegans Hypothetical
            protein C47E12.5a protein.
          Length = 1113

 Score =  126 bits (303), Expect = 2e-29
 Identities = 57/123 (46%), Positives = 84/123 (68%), Gaps = 1/123 (0%)
 Frame = -1

Query: 656  LALPFFGFSEPIAPSTNTYNENKWTLWDRFEVKGEITLQQFLDHFKNEHK-LEITMLSQG 480
            L++PFF  +EPI     TY + ++TLWDR +V+G +TLQ+F+D+ +N+    E++MLS G
Sbjct: 990  LSMPFFSSAEPIGAPKKTYMDREFTLWDRIDVQGPLTLQEFIDNVQNQTGGCEVSMLSAG 1049

Query: 479  VCMLYSFFMPKAKRLERLNLPMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEVPYV 300
             C+L+SFFM   K+ ERL   +  V  ++ KK L P V+ALV E   +D DG DVEVPY+
Sbjct: 1050 ACLLFSFFMNAGKKQERLKTEVKAVYEELLKKSLHPSVHALVLEPMMSDPDGEDVEVPYI 1109

Query: 299  KYT 291
            +Y+
Sbjct: 1110 RYS 1112



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/32 (59%), Positives = 23/32 (71%), Gaps = 4/32 (12%)
 Frame = -3

Query: 738  AGLVCLELYKL--AQGFNK--LEVFKNGFVNL 655
            AGLVC+ELYK+  A G  K  +E FKN F+NL
Sbjct: 959  AGLVCIELYKVVDANGIPKTPMERFKNTFLNL 990


>Z81036-3|CAB02741.1|  357|Caenorhabditis elegans Hypothetical
           protein C16C2.4 protein.
          Length = 357

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -1

Query: 419 PMSEVVTKVSKKKLEPHVNALVFELCCNDDDGNDVEV 309
           P S    K  KK+ EP V   V E  C D+D  + E+
Sbjct: 261 PQSSSEIKEEKKENEPEVKETVSEESCEDEDEEEEEL 297


>L25598-6|AAA27939.2|  886|Caenorhabditis elegans Hypothetical
           protein C06G4.1 protein.
          Length = 886

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = +1

Query: 295 YFTYGTSTSFPSSSLQHNSKTNAFTCGSNFFLDTFVTTSDIGRFNRSS 438
           YF  G STS  +   +HN+++   T GSN   +  ++ S+I R  + S
Sbjct: 73  YFP-GISTSLINVQREHNNRSKYDTWGSNSCSEPRISISNIERLEKPS 119


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,331,027
Number of Sequences: 27780
Number of extensions: 342115
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)