Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d10
         (370 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory recept...    21   4.0  
AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory recept...    21   4.0  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    20   7.0  

>AM292352-1|CAL23164.1|  250|Tribolium castaneum gustatory receptor
           candidate 31 protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/38 (23%), Positives = 19/38 (50%)
 Frame = -1

Query: 223 YEYAITFVSTLLFKNNLNLMVACNLINTLINFEINVFG 110
           YE+   +  ++L  NN++ ++  +    L    I +FG
Sbjct: 146 YEHYRLYQLSVLIDNNMSYIIIVSFATNLYFIIIQLFG 183


>AM292344-1|CAL23156.1|  291|Tribolium castaneum gustatory receptor
           candidate 23 protein.
          Length = 291

 Score = 21.0 bits (42), Expect = 4.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 88  FVNFCIANSDGVTIQHKMLTKRVKFFV 8
           ++N C  N   VTI     TK+++ F+
Sbjct: 57  WLNVCCLNLSIVTIFFNFATKKLEQFI 83


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 294 SRVASSSPLFIMERLLNQLNL 356
           S+VAS  PLF+ E    ++NL
Sbjct: 110 SQVASRWPLFLNEWTKIEINL 130


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,428
Number of Sequences: 336
Number of extensions: 1438
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7616520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)