Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d09
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...   324   7e-90
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    27   3.2  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   3.2  
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    27   3.2  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   7.3  
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo...    25   9.6  
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa...    25   9.6  

>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score =  324 bits (797), Expect = 7e-90
 Identities = 147/232 (63%), Positives = 185/232 (79%), Gaps = 3/232 (1%)
 Frame = -1

Query: 723 VTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLD 544
           VTTAGG+EED+IKC+ PTYVGDF+L GK LR +G+NRIGNL+VPNDNYC FEEW+ P+L+
Sbjct: 120 VTTAGGVEEDIIKCLGPTYVGDFHLDGKNLRAKGLNRIGNLIVPNDNYCRFEEWIFPILN 179

Query: 543 EMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTDGSLGDMMYFH 364
           +M+ EQ   GT W+PS    RLG+ IN+ESSV YWA++NNIPI+SPALTDGS+GDM+YFH
Sbjct: 180 KMVEEQETLGTHWTPSSFIRRLGKEINDESSVLYWAYKNNIPIYSPALTDGSIGDMLYFH 239

Query: 363 SFK---RPXXXXXXXXXXXXLNTMAVKANNTGVXXXXXXXIKHHICNANLMRNGADYAVY 193
           ++K   RP            +NT AV+AN +G+       +KHHICNANLMRNGA+++VY
Sbjct: 240 TYKATPRP-LVLDIVADIRNMNTHAVRANKSGIIILGGGVVKHHICNANLMRNGAEWSVY 298

Query: 192 VNTASEFDGSDAGARPDEAVSWGKIRPNANPVKLYADATLVFPLIVAQTFAK 37
           +N+A+EFDGSDAGARPDEAVSWGKIR +A  VK+Y + +L+FPLIVA TFAK
Sbjct: 299 INSANEFDGSDAGARPDEAVSWGKIRGDAKKVKVYGEVSLLFPLIVAATFAK 350



 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 808 GYTSNMISSGLRDTICFFS*KISFVDVI 725
           GYTSN+ISSG+R+ + +   +   VDVI
Sbjct: 93  GYTSNLISSGVREVLRYLV-QHKCVDVI 119


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 482 RAVMRDGLQTVPSFICSEIISSNNGVTHSSNKQ 580
           R  +  G     SF  S +ISSN    H SNKQ
Sbjct: 40  RPSLLSGTSPTSSFFNSSMISSNYTFPHGSNKQ 72


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 8/29 (27%), Positives = 19/29 (65%)
 Frame = -1

Query: 591 NDNYCLFEEWVTPLLDEMISEQMKEGTVW 505
           + N  + +EWV   LDE++++ +++  +W
Sbjct: 174 SSNGIVLDEWVFDRLDELLAQSLEDKELW 202


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 720 TTAGGIEEDLIKCIAPTYVGDFN 652
           T  G   ED+ KC+ P+Y G+F+
Sbjct: 23  TRIGFSGEDIPKCVLPSYCGEFS 45


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = -1

Query: 564 WVTPLLDEMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIF 412
           W T L++  + E++    V++P     RLG R ++ SS     +R+N   F
Sbjct: 471 WGTTLINRKLREEVLR-EVFAPKHARRRLGTRFHSRSSHRPSVFRDNSVAF 520


>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 268 YYDSSVVGFDGHGV 309
           YY + V+GF+GHG+
Sbjct: 320 YYATKVLGFEGHGL 333


>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 941

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/11 (81%), Positives = 9/11 (81%)
 Frame = +1

Query: 121 FTPRDCFVGPG 153
           FTP DCFVG G
Sbjct: 728 FTPNDCFVGNG 738


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,379,997
Number of Sequences: 5004
Number of extensions: 71711
Number of successful extensions: 183
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)