Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d09
         (810 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822...   116   2e-26
09_04_0150 - 15150169-15150228,15150294-15150529,15151844-151520...   105   3e-23
01_07_0293 - 42567564-42567751,42567905-42567994,42569028-425691...    31   1.4  
01_03_0075 - 12218501-12218611,12219028-12219267,12219698-122198...    30   1.9  
02_02_0712 + 13200174-13200761,13201966-13202616                       29   5.8  

>03_05_1076 +
           30180923-30181150,30181746-30181913,30182063-30182281,
           30182827-30182872,30183708-30183943,30184065-30184079,
           30185749-30186061,30186189-30186403,30186598-30186600
          Length = 480

 Score =  116 bits (279), Expect = 2e-26
 Identities = 49/69 (71%), Positives = 59/69 (85%)
 Frame = -1

Query: 723 VTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLD 544
           VTTAGGIEEDLIKC+APTY G+F+L G +LR++G+NRIGNLLVPNDNYC FE W+ PL D
Sbjct: 137 VTTAGGIEEDLIKCLAPTYRGEFSLPGTLLRSKGLNRIGNLLVPNDNYCKFENWIMPLFD 196

Query: 543 EMISEQMKE 517
           +M+ EQ  E
Sbjct: 197 QMLQEQSTE 205



 Score =  105 bits (251), Expect = 5e-23
 Identities = 45/64 (70%), Positives = 52/64 (81%)
 Frame = -1

Query: 282 TGVXXXXXXXIKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNAN 103
           TG+        KHHICNAN+ RNGADYAVY+NTA EFDGSD+GA+PDEAVSWGKI+ +A 
Sbjct: 237 TGIIVLGGGLPKHHICNANMFRNGADYAVYINTAQEFDGSDSGAQPDEAVSWGKIKGSAK 296

Query: 102 PVKL 91
           PVKL
Sbjct: 297 PVKL 300



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 808 GYTSNMISSGLRDTICFFS*KISFVDVI 725
           G+TSN++SSG+RD + F   +   VDVI
Sbjct: 110 GFTSNLVSSGIRDVVRFLV-QHHMVDVI 136


>09_04_0150 -
           15150169-15150228,15150294-15150529,15151844-15152063,
           15152218-15152385,15152969-15153214
          Length = 309

 Score =  105 bits (253), Expect = 3e-23
 Identities = 44/58 (75%), Positives = 52/58 (89%)
 Frame = -1

Query: 723 VTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPL 550
           VTTAGGIEEDLIKC+APTY GDF+L G +LR++G+NRIGNLLVPNDNYC FE W+ P+
Sbjct: 143 VTTAGGIEEDLIKCLAPTYRGDFSLPGTLLRSKGLNRIGNLLVPNDNYCKFENWIMPI 200



 Score =  101 bits (243), Expect = 5e-22
 Identities = 43/63 (68%), Positives = 51/63 (80%)
 Frame = -1

Query: 282 TGVXXXXXXXIKHHICNANLMRNGADYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNAN 103
           TG+        KHHICNAN+ RNGAD+AVY+NTA EFDGSD+GA+PDEAVSWGKI+ +A 
Sbjct: 228 TGIIVLGGGLPKHHICNANMFRNGADFAVYINTAQEFDGSDSGAQPDEAVSWGKIKGSAK 287

Query: 102 PVK 94
           PVK
Sbjct: 288 PVK 290



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -3

Query: 808 GYTSNMISSGLRDTICFFS*KISFVDVI 725
           G+TSN++SSG+RD + F   +   VDVI
Sbjct: 116 GFTSNLVSSGIRDVVRFLV-QHHMVDVI 142


>01_07_0293 -
           42567564-42567751,42567905-42567994,42569028-42569195,
           42569284-42569562,42569673-42569739
          Length = 263

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +1

Query: 271 YDSSVVGFDGHGVQSA*VSQYVYDQSGTLKRV-EVHHVT*GSISQCGTKY---RYVVPPS 438
           YD SV+  D  G+++    Q   DQSG+  RV E  H +  +  Q GT++    Y  PPS
Sbjct: 75  YDKSVLYSDQCGLENDMDEQESNDQSGSKGRVDEQKHKSNAAAKQYGTRHVLVLYDFPPS 134

Query: 439 PIA 447
            +A
Sbjct: 135 TLA 137


>01_03_0075 -
           12218501-12218611,12219028-12219267,12219698-12219815,
           12219949-12220016,12220124-12220375,12221362-12221463,
           12221734-12221802,12221892-12221987,12222161-12222208,
           12222352-12222479,12222818-12222896,12223651-12223797,
           12223956-12224022,12224655-12224830,12225588-12225755,
           12225879-12225992,12226657-12226722,12227306-12227524,
           12228142-12228321,12228481-12228584,12228998-12229277,
           12230582-12231004
          Length = 1084

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 672 TYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPS 496
           TYV +  L    LR      +  L++ N NYC+ +E  + L+DE  +  +  G    PS
Sbjct: 251 TYVTNSELGFDYLRDNLAMTVDELVLRNFNYCVIDEVDSILIDEARTPLIISGLAEKPS 309


>02_02_0712 + 13200174-13200761,13201966-13202616
          Length = 412

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 8/52 (15%)
 Frame = -1

Query: 204 YAVYVNTASEFDGSDAGAR--------PDEAVSWGKIRPNANPVKLYADATL 73
           Y+VYV+T   F+GSD G          P + V WG+I       +L A A L
Sbjct: 167 YSVYVHTDPAFNGSDPGEASVFYRRTIPSKEVKWGEISMVEAERRLLAHALL 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,150,382
Number of Sequences: 37544
Number of extensions: 470819
Number of successful extensions: 954
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)