Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d09
         (810 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT010229-1|AAQ23547.1|  368|Drosophila melanogaster RE64695p pro...   356   2e-98
AE014296-1396|AAF50467.2|  368|Drosophila melanogaster CG8005-PA...   356   2e-98
BT023153-1|AAY55569.1|  520|Drosophila melanogaster IP03480p pro...    29   5.7  
BT023136-1|AAY55552.1|  519|Drosophila melanogaster IP03580p pro...    29   5.7  
AE014297-1152|AAN13471.2|  500|Drosophila melanogaster CG14680-P...    29   5.7  
AE014297-1151|AAF54532.3|  514|Drosophila melanogaster CG14680-P...    29   5.7  

>BT010229-1|AAQ23547.1|  368|Drosophila melanogaster RE64695p
           protein.
          Length = 368

 Score =  356 bits (876), Expect = 2e-98
 Identities = 162/238 (68%), Positives = 192/238 (80%)
 Frame = -1

Query: 723 VTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLD 544
           VTTAGG+EED IKC+APT++G F LSG+ LR RGINRIGNLLVPNDNYC FE+WV PLLD
Sbjct: 124 VTTAGGVEEDFIKCLAPTFMGSFELSGRDLRERGINRIGNLLVPNDNYCKFEDWVMPLLD 183

Query: 543 EMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTDGSLGDMMYFH 364
           EM+ EQ  +GT+WSPS+I  RLGERI + SS+ YWA +N IP+F PALTDGSLGDMMYFH
Sbjct: 184 EMLEEQKSQGTIWSPSKIIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFH 243

Query: 363 SFKRPXXXXXXXXXXXXLNTMAVKANNTGVXXXXXXXIKHHICNANLMRNGADYAVYVNT 184
           SF++P            LNTMAVKA N+G+       IKHHICNANLMRNGADY+V++NT
Sbjct: 244 SFRQPGLVVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVFINT 303

Query: 183 ASEFDGSDAGARPDEAVSWGKIRPNANPVKLYADATLVFPLIVAQTFAKHHFSSKKNV 10
           ASEFDGSD+GARPDEA+SWGKIR +A PVK+YA+A+LVFPLIV +TFAK H  + K +
Sbjct: 304 ASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETFAKRHHCAGKEL 361



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -3

Query: 808 GYTSNMISSGLRDTICFFS 752
           GYTSN++SSGLR+TI F +
Sbjct: 97  GYTSNLVSSGLRETIRFLA 115


>AE014296-1396|AAF50467.2|  368|Drosophila melanogaster CG8005-PA
           protein.
          Length = 368

 Score =  356 bits (876), Expect = 2e-98
 Identities = 162/238 (68%), Positives = 192/238 (80%)
 Frame = -1

Query: 723 VTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLD 544
           VTTAGG+EED IKC+APT++G F LSG+ LR RGINRIGNLLVPNDNYC FE+WV PLLD
Sbjct: 124 VTTAGGVEEDFIKCLAPTFMGSFELSGRDLRERGINRIGNLLVPNDNYCKFEDWVMPLLD 183

Query: 543 EMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTDGSLGDMMYFH 364
           EM+ EQ  +GT+WSPS+I  RLGERI + SS+ YWA +N IP+F PALTDGSLGDMMYFH
Sbjct: 184 EMLEEQKSQGTIWSPSKIIHRLGERIGDPSSIYYWAAKNQIPVFCPALTDGSLGDMMYFH 243

Query: 363 SFKRPXXXXXXXXXXXXLNTMAVKANNTGVXXXXXXXIKHHICNANLMRNGADYAVYVNT 184
           SF++P            LNTMAVKA N+G+       IKHHICNANLMRNGADY+V++NT
Sbjct: 244 SFRQPGLVVDILSDLRRLNTMAVKAVNSGMIIVGGGVIKHHICNANLMRNGADYSVFINT 303

Query: 183 ASEFDGSDAGARPDEAVSWGKIRPNANPVKLYADATLVFPLIVAQTFAKHHFSSKKNV 10
           ASEFDGSD+GARPDEA+SWGKIR +A PVK+YA+A+LVFPLIV +TFAK H  + K +
Sbjct: 304 ASEFDGSDSGARPDEAISWGKIRKDATPVKVYAEASLVFPLIVGETFAKRHHCAGKEL 361



 Score = 32.7 bits (71), Expect = 0.61
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = -3

Query: 808 GYTSNMISSGLRDTICFFS 752
           GYTSN++SSGLR+TI F +
Sbjct: 97  GYTSNLVSSGLRETIRFLA 115


>BT023153-1|AAY55569.1|  520|Drosophila melanogaster IP03480p
           protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 207 DYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNANPVKL 91
           DY   V+    FDG D G       +WGK+R   NP+ L
Sbjct: 116 DYFKRVHRREVFDGYD-GLTSGNGPAWGKMRTAVNPILL 153


>BT023136-1|AAY55552.1|  519|Drosophila melanogaster IP03580p
           protein.
          Length = 519

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 207 DYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNANPVKL 91
           DY   V+    FDG D G       +WGK+R   NP+ L
Sbjct: 115 DYFKRVHRREVFDGYD-GLTSGNGPAWGKMRTAVNPILL 152


>AE014297-1152|AAN13471.2|  500|Drosophila melanogaster CG14680-PB,
           isoform B protein.
          Length = 500

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 207 DYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNANPVKL 91
           DY   V+    FDG D G       +WGK+R   NP+ L
Sbjct: 110 DYFKRVHRREVFDGYD-GLTSGNGPAWGKMRTAVNPILL 147


>AE014297-1151|AAF54532.3|  514|Drosophila melanogaster CG14680-PA,
           isoform A protein.
          Length = 514

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 207 DYAVYVNTASEFDGSDAGARPDEAVSWGKIRPNANPVKL 91
           DY   V+    FDG D G       +WGK+R   NP+ L
Sbjct: 110 DYFKRVHRREVFDGYD-GLTSGNGPAWGKMRTAVNPILL 147


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,673,539
Number of Sequences: 53049
Number of extensions: 836803
Number of successful extensions: 2096
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3798466620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)