Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d09
         (810 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical ...   305   2e-83
U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical p...    37   0.020
U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical p...    37   0.020
AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical...    28   6.9  
AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical ...    28   6.9  

>AL023828-6|CAA19451.1|  371|Caenorhabditis elegans Hypothetical
           protein Y17G7B.4 protein.
          Length = 371

 Score =  305 bits (750), Expect = 2e-83
 Identities = 137/231 (59%), Positives = 177/231 (76%), Gaps = 1/231 (0%)
 Frame = -1

Query: 723 VTTAGGIEEDLIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNYCLFEEWVTPLLD 544
           VT+AGGIEEDLIKC+ P+Y+G F + G  LR+ G+NR GN+L+PNDNYC FE+W+ P+LD
Sbjct: 136 VTSAGGIEEDLIKCLKPSYLGTFTMDGAKLRSNGMNRAGNVLIPNDNYCAFEDWLMPILD 195

Query: 543 EMISEQMKEGTVWSPSRITARLGERINNESSVCYWAWRNNIPIFSPALTDGSLGDMMYFH 364
           E + EQ ++   W+PS++  RLGERI +ESS+ YWA ++ IP+F PALTDGSLGDM+YFH
Sbjct: 196 ECLVEQEEKHLNWTPSKLIQRLGERIGDESSILYWAAKHRIPVFCPALTDGSLGDMLYFH 255

Query: 363 SFK-RPXXXXXXXXXXXXLNTMAVKANNTGVXXXXXXXIKHHICNANLMRNGADYAVYVN 187
           S K  P            +NT+AVK+  TG        +KHHI NANLMRNGAD+ VY+N
Sbjct: 256 SVKSSPGLRVDIVEDVRHINTIAVKSFKTGSIILGGGVVKHHINNANLMRNGADHTVYIN 315

Query: 186 TASEFDGSDAGARPDEAVSWGKIRPNANPVKLYADATLVFPLIVAQTFAKH 34
           T  EFDGSD+GA+PDEAVSWGK++P+A  VK++A+ATLVFPL+VA+TFAKH
Sbjct: 316 TGQEFDGSDSGAQPDEAVSWGKVKPSAGAVKVHAEATLVFPLLVAETFAKH 366


>U53181-11|AAM29689.1|  315|Caenorhabditis elegans Hypothetical
           protein F36D4.5b protein.
          Length = 315

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 621 INRIGNLL--VPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 454
           INR+ NL   +P    C+ +EW+TP++ +   ++ K G+V S    T +L  R  N+S
Sbjct: 134 INRLANLSGSIPFLEKCIPQEWLTPIVLQASVDEKKRGSVDSAEEATEKLVVRSLNDS 191


>U53181-10|AAA93489.2|  334|Caenorhabditis elegans Hypothetical
           protein F36D4.5a protein.
          Length = 334

 Score = 36.7 bits (81), Expect = 0.020
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = -1

Query: 621 INRIGNLL--VPNDNYCLFEEWVTPLLDEMISEQMKEGTVWSPSRITARLGERINNES 454
           INR+ NL   +P    C+ +EW+TP++ +   ++ K G+V S    T +L  R  N+S
Sbjct: 153 INRLANLSGSIPFLEKCIPQEWLTPIVLQASVDEKKRGSVDSAEEATEKLVVRSLNDS 210


>AL033514-10|CAE47472.1|  436|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9b protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 651 LSGKVLRTRGINRIGNLLVPNDNYC-LFEEWVTPLLDEM 538
           +  K+   R  N  G +LV  D++C + EEW+ PLLD++
Sbjct: 236 IRAKIFGARRAN--GEVLVFLDSHCEVNEEWLPPLLDQI 272


>AL033514-9|CAA22098.1|  605|Caenorhabditis elegans Hypothetical
           protein Y75B8A.9a protein.
          Length = 605

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 651 LSGKVLRTRGINRIGNLLVPNDNYC-LFEEWVTPLLDEM 538
           +  K+   R  N  G +LV  D++C + EEW+ PLLD++
Sbjct: 236 IRAKIFGARRAN--GEVLVFLDSHCEVNEEWLPPLLDQI 272


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,952,561
Number of Sequences: 27780
Number of extensions: 411308
Number of successful extensions: 843
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1987863822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)