Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d09
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.5  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.5  
DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein ...    23   4.4  
DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.               23   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   4.4  
AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein ...    23   4.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   5.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   7.7  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -1

Query: 693 LIKCIAPTYVGDFNLSGKVLRTRGINRIGNLLVPNDNY 580
           ++KC+ P++V DF    KVL        G   VP D+Y
Sbjct: 121 ILKCVVPSFVADF---VKVLSWH--TDQGEEFVPGDDY 153


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 108  ANPVKLYADATLVFPLIVA 52
            A+ V  YAD  ++ PLIVA
Sbjct: 1602 ASTVPFYADVKVMLPLIVA 1620


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 108  ANPVKLYADATLVFPLIVA 52
            A+ V  YAD  ++ PLIVA
Sbjct: 1598 ASTVPFYADVKVMLPLIVA 1616


>DQ855482-1|ABH88169.1|  116|Apis mellifera chemosensory protein 1
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 106 RIRSDFTPRDCFVGPGTCIT 165
           R+R+ +   DCF+  G+C+T
Sbjct: 40  RLRNQYY--DCFIDAGSCLT 57


>DQ435326-1|ABD92641.1|  132|Apis mellifera OBP9 protein.
          Length = 132

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 6/21 (28%), Positives = 12/21 (57%)
 Frame = -3

Query: 121 NQTECESSEAICRCYISVPPD 59
           N+  CE +  + +CY+   P+
Sbjct: 104 NEDPCEKAYQLVKCYVEFHPE 124


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 670 GRSDAFYQVFLDPSSCSHKSHPQSLFFN 753
           GR+D  Y+V  D  S   K  P +  FN
Sbjct: 346 GRTDTTYRVVCDACSMGVKYIPNTEVFN 373


>AJ973399-1|CAJ01446.1|  116|Apis mellifera hypothetical protein
           protein.
          Length = 116

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 106 RIRSDFTPRDCFVGPGTCIT 165
           R+R+ +   DCF+  G+C+T
Sbjct: 40  RLRNQYY--DCFIDAGSCLT 57


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = +3

Query: 549 TMV*PTPQTNNNYHSAPTNCLSC 617
           TM   TP+   N    PT C+ C
Sbjct: 21  TMPETTPRRKKNKKPLPTECVFC 43


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 322 VSQYVYDQSGTLKRVEVHHVT 384
           V QY+Y+Q+G L    +  VT
Sbjct: 384 VDQYLYNQTGPLSSTGLAQVT 404


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -3

Query: 316 QIEHHGRQSQQHWSHNIRWGF 254
           Q +HH   S +H S+  R+G+
Sbjct: 103 QQQHHQDSSSEHASNQERFGY 123


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,616
Number of Sequences: 438
Number of extensions: 4973
Number of successful extensions: 37
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)