Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d06
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1330 + 26191062-26191314,26191894-26191961,26192125-261923... 32 0.45
10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386 31 0.78
02_05_0201 + 26687369-26689228 31 1.0
06_03_0077 + 16284106-16284128,16284552-16284795,16285490-162855... 30 1.8
04_01_0260 - 3506672-3508981 30 1.8
02_02_0145 + 7163922-7165604 30 1.8
05_05_0057 + 21995018-21997006 29 3.2
09_02_0302 - 7086017-7086124,7086125-7086796,7087511-7088070,708... 29 4.2
03_02_1027 + 13422698-13422914,13424899-13424959,13425366-134254... 28 5.5
01_06_1263 + 35840502-35841308,35841763-35841969,35842272-358423... 28 5.5
08_02_1092 + 24267737-24268641,24269005-24269884 28 7.3
07_03_0475 + 18544637-18544772,18544925-18545031,18545114-185452... 28 7.3
07_03_1027 - 23371826-23372006,23372110-23372171,23372595-233743... 27 9.7
05_03_0125 + 8738770-8739237,8739266-8739742 27 9.7
04_04_0500 - 25677767-25680850 27 9.7
01_06_0958 - 33357689-33357997,33358135-33358284,33358371-333585... 27 9.7
>08_02_1330 +
26191062-26191314,26191894-26191961,26192125-26192355,
26192736-26192837,26192893-26192955,26193910-26193984
Length = 263
Score = 31.9 bits (69), Expect = 0.45
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 226 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQT-RSNAVRQNFPETNVR 402
+ R + VP++R G+ PQ+NS Q+ + +VP+ K + V++ P N
Sbjct: 108 VMRKSSVPDLREKLSGVQRPQLNSTVQIPK--SVPEISTSAKPVQKREPVQKREPPVNAA 165
Query: 403 TP 408
P
Sbjct: 166 LP 167
>10_03_0031 + 7214010-7215450,7215534-7216913,7217007-7217386
Length = 1066
Score = 31.1 bits (67), Expect = 0.78
Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)
Frame = +1
Query: 58 NQASFLADNTRLLTSTPAGF--TNVLNAPSVRNLGNNRYQPGYQLSNNRFVST--SDINR 225
N A + NT +L + F N + + ++GN +LSNN+ ST +
Sbjct: 498 NLAGSIPSNTAMLKNVVMLFLQNNEFSGSIIEDIGNLTKLEHLRLSNNQLSSTVPPSLFH 557
Query: 226 ITRNNDVPNIRNVFQGISDPQINSLRQLRRMD 321
+ ++ RN+F G I L+Q+ +MD
Sbjct: 558 LDSLIELDLSRNLFSGALPVDIGHLKQIYKMD 589
>02_05_0201 + 26687369-26689228
Length = 619
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 506 PPPAKSMPTPATFKVLM*LCKRGFCC 429
PPP + P P T++ +CK+GF C
Sbjct: 23 PPPPQPPPPPLTYRHHCKVCKKGFMC 48
>06_03_0077 +
16284106-16284128,16284552-16284795,16285490-16285591,
16286347-16287057
Length = 359
Score = 29.9 bits (64), Expect = 1.8
Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +3
Query: 339 LPHQTDAIQCSQTKLPR---DQRAHARRCSKRTAAKPPFT*SHENLESSRSGHTLGRRRL 509
LP A S+TK PR D A A R + TA + PF +H +E +G GRRR
Sbjct: 36 LPVLPLAPSASRTKSPRLVLDHLAKAYRVLETTAQEAPFELNHLYVEMGSAGDK-GRRRR 94
Query: 510 S 512
S
Sbjct: 95 S 95
>04_01_0260 - 3506672-3508981
Length = 769
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 196 RFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNVPDFHYHTKQTRSNAVR 375
RF+ + ++ R N++ P ++ G Q N LRQ R ++ ++ + Q + NA
Sbjct: 359 RFILSLNLFRFLVNSNNPTRYRMWSGTIG-QYNLLRQCTRQEDEKTSNFWSSQWKKNAPE 417
Query: 376 QNFPETNVRTPEGVQ 420
+ E G+Q
Sbjct: 418 DTWMEYEYHNSRGIQ 432
>02_02_0145 + 7163922-7165604
Length = 560
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/69 (27%), Positives = 31/69 (44%)
Frame = +1
Query: 67 SFLADNTRLLTSTPAGFTNVLNAPSVRNLGNNRYQPGYQLSNNRFVSTSDINRITRNNDV 246
SF A+N + P + + N ++ NL N+ ++ N F ST N+I ++V
Sbjct: 475 SFTAENNQFSGELPTDMSRLANL-TMLNLAGNQLLTTVKIYINNFASTLPSNKIVSKSNV 533
Query: 247 PNIRNVFQG 273
I QG
Sbjct: 534 KEIGLQSQG 542
>05_05_0057 + 21995018-21997006
Length = 662
Score = 29.1 bits (62), Expect = 3.2
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = +3
Query: 387 RDQRAHARRCSKRTAAKPPFT*SHENLESSR------SGHTLGRRRLSFVYRRHISTRYN 548
R A +RC+ +A+ F+ + L SSR +G+ + RRR R+ S RY+
Sbjct: 555 RGCNARMQRCNSNASARSSFSSNSGGLGSSRRSYVDGNGNVVKRRREECALERNRSARYS 614
Query: 549 QRHQ*N 566
H N
Sbjct: 615 PGHADN 620
>09_02_0302 -
7086017-7086124,7086125-7086796,7087511-7088070,
7088754-7089131,7089357-7089821,7090022-7090127,
7090219-7090294,7090407-7090648,7090824-7090904,
7091013-7091205,7091336-7091558,7091611-7091646,
7091694-7091790
Length = 1078
Score = 28.7 bits (61), Expect = 4.2
Identities = 14/53 (26%), Positives = 25/53 (47%)
Frame = -2
Query: 606 SPGVSTLHIITSAGSIDGVDYILY*CGGGKQKITAAGQEYAHSCYFQGSHVIM 448
S G +HI + G++ +D ++ C G + A+GQ H SH ++
Sbjct: 691 SEGSLPIHIAAANGTLGIIDQLIKLCPGCESSCNASGQTILHIAVQTESHDVV 743
>03_02_1027 +
13422698-13422914,13424899-13424959,13425366-13425464,
13428959-13429361
Length = 259
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/54 (22%), Positives = 23/54 (42%)
Frame = +3
Query: 261 CISGHFRPSNKLIAPIAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSK 422
C++ H S+ +A + + AR L + + + D + H R C+K
Sbjct: 204 CLTAHATASDGKVAQLETELEVARDDLQKMKEIVASNDVAFQNDSKIHPRNCAK 257
>01_06_1263 +
35840502-35841308,35841763-35841969,35842272-35842370,
35843361-35843464,35844521-35844698,35844774-35845244,
35845383-35845523,35846290-35846349,35846427-35846490,
35847295-35847524,35847606-35847704
Length = 819
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/66 (27%), Positives = 30/66 (45%)
Frame = +1
Query: 148 NLGNNRYQPGYQLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINSLRQLRRMDNV 327
N G ++ PGY SNN + S S + +N V + +Q + N+ + + N
Sbjct: 143 NAGAHQTAPGYATSNNYYQSNSWTGGSSGDNHVQS----YQSYTPSDTNAAQSSSSLPN- 197
Query: 328 PDFHYH 345
+HYH
Sbjct: 198 NSYHYH 203
>08_02_1092 + 24267737-24268641,24269005-24269884
Length = 594
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/52 (32%), Positives = 21/52 (40%)
Frame = -2
Query: 633 CNNKQDSTFSPGVSTLHIITSAGSIDGVDYILY*CGGGKQKITAAGQEYAHS 478
CN Q+ + ST SA DG + + CG GK TA E S
Sbjct: 95 CNGNQEKKTAQKSSTSESFASAKVSDGTNGLRKTCGSGKVSDTADSTESGKS 146
>07_03_0475 +
18544637-18544772,18544925-18545031,18545114-18545295,
18545467-18545599,18545708-18545920
Length = 256
Score = 27.9 bits (59), Expect = 7.3
Identities = 16/35 (45%), Positives = 21/35 (60%)
Frame = -2
Query: 642 QVRCNNKQDSTFSPGVSTLHIITSAGSIDGVDYIL 538
QVRC N SP T+ +IT +G+ DG D+IL
Sbjct: 81 QVRCTNPYYC--SPNGVTI-VITDSGASDGTDFIL 112
>07_03_1027 -
23371826-23372006,23372110-23372171,23372595-23374335,
23374609-23374704,23374967-23375043,23376807-23377307
Length = 885
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 181 QLSNNRFVSTSDINRITRNNDVPNIRNVFQGISDPQINS 297
+ ++N F+S+S I+ + +V R VF GI P I S
Sbjct: 536 RFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVS 574
>05_03_0125 + 8738770-8739237,8739266-8739742
Length = 314
Score = 27.5 bits (58), Expect = 9.7
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 282 PSNKLIAP--IAAHGQRARLSLPHQTDAIQCSQTKLPRDQRAHARRCSKR 425
P K++AP +A+HG+R + L + + I ++ KL R+ A KR
Sbjct: 243 PLLKMVAPAVVASHGRRESIELHNDEEKIAAAKRKL-REGYQDAEEAKKR 291
>04_04_0500 - 25677767-25680850
Length = 1027
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 187 SNNRFVSTSDINRITRNNDVPNIRNVFQGISDP 285
S++ F + ++ + DVPN R VF GI+ P
Sbjct: 190 SSSVFCEAALVDMYAKCGDVPNARRVFDGIACP 222
>01_06_0958 -
33357689-33357997,33358135-33358284,33358371-33358511,
33359807-33360592
Length = 461
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +3
Query: 267 SGHFRPSNKLIAPIAAHGQRARLSLPHQTDA 359
S R + +A AHG+ L LPH TDA
Sbjct: 192 SSESRGATLAVAAATAHGREEPLLLPHGTDA 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,880,181
Number of Sequences: 37544
Number of extensions: 397536
Number of successful extensions: 1057
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1012
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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