Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d05
         (802 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    29   0.033
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.1  
DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like pr...    21   8.7  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    21   8.7  

>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 29.5 bits (63), Expect = 0.033
 Identities = 22/83 (26%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
 Frame = -1

Query: 634 ERCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNG 455
           E C  + C +  TC        +  NS +C   C        C  +    CDS   L+  
Sbjct: 25  EDCTETSCMNGGTCI-------DGINSYIC--TCKPGFTGSNCQ-NRINLCDSSPCLNGA 74

Query: 454 TCIRNNTACSANCSAG--GEECG 392
           TC  + T  + +C  G  G++CG
Sbjct: 75  TCQDHTTHYTCHCPYGYTGKDCG 97



 Score = 27.5 bits (58), Expect = 0.13
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
 Frame = -1

Query: 559 NSNVCYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTACSANCSAG--GEECGL 389
           NS+ C+  C        C  +   ECDS    + GTC+    + S  C  G  G+ C L
Sbjct: 166 NSHRCH--CSDGYSGSYCQTE-INECDSAPCQNGGTCLDLIGSYSCKCPKGFQGQNCEL 221



 Score = 22.2 bits (45), Expect = 5.0
 Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
 Frame = +1

Query: 724 HLCR-PDGTQGRTCRYSWRNC 783
           H C  P+G  G+ C +S  +C
Sbjct: 360 HKCTCPEGFYGKNCEFSGYDC 380


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
 Frame = -1

Query: 757  CAPVCRRACTNGACSEPDKCTCDDGYRLSPED-PFVCLPVCSERCVNSHCS-SPNTCTCF 584
            CAP          C  P+K TCD    ++  D      P  S   V++  S +P + T +
Sbjct: 1307 CAPGLHWDNNKNICDWPEKATCDGTSNVNVVDIVTTAKPAQSTTSVSTTTSWNPGSTTNY 1366

Query: 583  KDYE 572
             +++
Sbjct: 1367 PEWQ 1370


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 9/26 (34%), Positives = 12/26 (46%)
 Frame = -1

Query: 490 CECDSGYILSNGTCIRNNTACSANCS 413
           C CD+ Y+      I N   C  NC+
Sbjct: 777 CTCDAKYLEIKCKRIYNEKQCCKNCA 802


>DQ138190-1|ABA03054.1|  135|Tribolium castaneum bursicon-like
           protein protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 559 NSNVCYKKCDGACEN 515
           N  V   KC+G+C++
Sbjct: 51  NGEVAVNKCEGSCKS 65


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -1

Query: 631 RCVNSHCSSPNTCTCFKDYERNDTNSNVCY 542
           +C+ S  SS  TC    ++  N T S + +
Sbjct: 234 KCITSSLSSLYTCIAGYEFNANFTISYILF 263


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,118
Number of Sequences: 336
Number of extensions: 4072
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21791490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)