Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d05
(802 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1120 + 31037811-31038813,31038903-31038991,31039094-310391... 39 0.005
04_01_0377 - 4970034-4970687 36 0.028
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 36 0.050
03_05_1019 + 29736644-29736709,29737156-29737515,29737595-297377... 34 0.15
02_05_1205 + 34939062-34939919 34 0.15
09_02_0533 - 10325681-10326211,10326260-10326328,10326758-103268... 33 0.35
03_05_0466 - 24602715-24603964,24605762-24605944,24606381-246072... 33 0.35
08_02_1159 + 24773328-24773994,24775430-24775558,24776080-247762... 31 0.81
02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263 31 0.81
01_01_0150 - 1344247-1345011 31 0.81
10_05_0080 - 8907628-8908182 31 1.1
09_03_0111 - 12440818-12441129,12441242-12441585,12441663-124419... 31 1.4
01_01_0153 - 1352982-1353731 30 1.9
11_06_0629 + 25646268-25646591 30 2.5
10_08_0333 - 16850267-16851802 30 2.5
09_02_0221 + 5962606-5963197,5963711-5963837,5963994-5964100,596... 30 2.5
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454... 30 2.5
01_03_0017 + 11677029-11677100,11677992-11678030,11678169-116783... 30 2.5
09_04_0472 - 17895285-17896459,17897113-17897271,17897374-178977... 29 4.3
02_04_0452 + 23044190-23045227 29 4.3
01_01_0491 + 3629025-3629051,3629679-3629778,3629947-3630015,363... 29 4.3
07_03_1705 + 28848293-28848321,28848766-28848841,28848940-288490... 29 5.7
04_04_1523 - 34148407-34150224 29 5.7
04_03_0130 - 11622139-11623325,11626144-11627116 29 5.7
02_02_0030 - 6207784-6208154,6208286-6211310 29 5.7
11_06_0368 + 22756988-22758205 28 7.5
11_02_0082 - 8088169-8088284,8088613-8088697,8090344-8090442,809... 28 7.5
10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454 28 7.5
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 28 7.5
08_02_1138 + 24631919-24632248,24634100-24634502,24634788-246349... 28 7.5
05_01_0259 + 1990180-1990428,1990768-1991526 28 7.5
04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313 28 7.5
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 28 7.5
01_01_0878 + 6888459-6889227,6890498-6890523,6891679-6891843,689... 28 7.5
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 28 9.9
08_02_1312 + 26055372-26056056,26056935-26057187,26057277-260580... 28 9.9
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 28 9.9
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 28 9.9
>04_04_1120 +
31037811-31038813,31038903-31038991,31039094-31039163,
31039270-31039353,31039452-31039528,31039631-31039712,
31039847-31039929,31040270-31040333,31040435-31040566,
31040674-31040777,31040901-31040996,31041144-31041251
Length = 663
Score = 38.7 bits (86), Expect = 0.005
Identities = 30/91 (32%), Positives = 42/91 (46%), Gaps = 6/91 (6%)
Frame = -1
Query: 775 AMSNGTCAPVCRRACTNGACSEPD--KCTCDDGYRLSPEDPFVCLPV--CSER--CVNSH 614
AM+NG C R T ACS+ D C C G++ D C V CSE+ C H
Sbjct: 476 AMNNGGCWKGTRDGKTFSACSDSDLSGCKCPPGFK---GDGLHCEDVDECSEKLACSCPH 532
Query: 613 CSSPNTCTCFKDYERNDTNSNVCYKKCDGAC 521
CS NT + ++ + +N+ Y K + C
Sbjct: 533 CSCKNT---WGSFDCSCHGNNLMYIKAEDTC 560
>04_01_0377 - 4970034-4970687
Length = 217
Score = 36.3 bits (80), Expect = 0.028
Identities = 45/183 (24%), Positives = 62/183 (33%), Gaps = 24/183 (13%)
Frame = -1
Query: 793 LCHDNYAMSN-GTCA---PVCRRACTNGACSEPDKCTCDDGYRLSPEDPFV-----C--- 650
+C N S G C C C +GAC +C G + C
Sbjct: 29 ICPHNLCCSQFGYCGLGRDYCGTGCQSGACCSSQRCGSQGGGATCSNNQCCSQYGYCGFG 88
Query: 649 LPVCSERCVNSHCSSPNTCTCFKDYERNDTNSNVCYKK----------CDGACENGRCSL 500
C C N C + C ++ +N+C + C C++G C
Sbjct: 89 SEYCGSGCQNGPCRAD--IKCGRNANGELCPNNMCCSQWGYCGLGSEFCGNGCQSGACCP 146
Query: 499 DGACECDSGYILSNGTCIRNNTACSAN--CSAGGEECGLGSGCPSEQTHFPAEVTSAGLA 326
+ C +G G NN CSA C GG CG SGC S + + +A LA
Sbjct: 147 EKRCGKQAG-----GDKCPNNFCCSAGGYCGLGGNYCG--SGCQSGGCYKGGDGMAAILA 199
Query: 325 GLQ 317
Q
Sbjct: 200 NNQ 202
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 35.5 bits (78), Expect = 0.050
Identities = 23/64 (35%), Positives = 26/64 (40%)
Frame = -1
Query: 631 RCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGT 452
RC SH N + N+ NV Y C G C N S C C G + NGT
Sbjct: 70 RCNCSHGYEGNPYIKDGCEDINECLDNVTYP-CPGICNNTMGSF--TCSCHQGNYMENGT 126
Query: 451 CIRN 440
CI N
Sbjct: 127 CIPN 130
>03_05_1019 +
29736644-29736709,29737156-29737515,29737595-29737735,
29737912-29738044,29738344-29738457,29738553-29738701,
29740815-29740907,29741019-29741079,29741180-29741512,
29742149-29742224,29742322-29742421,29743300-29743369,
29743987-29744082,29744355-29744402,29744427-29744658,
29745186-29745246,29745265-29745375
Length = 747
Score = 33.9 bits (74), Expect = 0.15
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = -1
Query: 547 CYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTA-CSANCSAGGEEC 395
C KC G +G C +G CEC+SG+ T I +TA C CS G C
Sbjct: 568 CPAKCTG---HGICKANGICECESGW-----TGIDCSTAVCDEQCSLHGGVC 611
>02_05_1205 + 34939062-34939919
Length = 285
Score = 33.9 bits (74), Expect = 0.15
Identities = 26/79 (32%), Positives = 34/79 (43%)
Frame = +2
Query: 503 RAPAIFASSIAFLVTNVRIRIVTLVVFEARARIRG*TVRVHAALRTDRQADERILGTQPV 682
RAP F VT + +V+ V A + RG T R AAL+ R R G V
Sbjct: 102 RAPRRFGGDAVLGVTRI---VVSTFVGSASSSARGTTGRQVAALQLRRPRSLRPQGIVNV 158
Query: 683 AIVARALIGLRARPICAGP 739
A+ RA P+C+ P
Sbjct: 159 AVAVLDATDARAVPLCSSP 177
>09_02_0533 -
10325681-10326211,10326260-10326328,10326758-10326855,
10326968-10327117,10327848-10327976,10328063-10328999
Length = 637
Score = 32.7 bits (71), Expect = 0.35
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Frame = -1
Query: 754 APVCRRACTNGACSEPD---KCTCDDGYRLSP------EDPFVCLPVCSERCVNSHCSSP 602
AP C A N C D KC C DGY+ +P D C C + ++P
Sbjct: 276 APDCLSA--NSFCHAYDLGYKCHCSDGYQGNPYIRGGCHDIDECKSPQDYSCYGNCNNTP 333
Query: 601 NT--CTCFKDYERNDTNSNVC 545
+ C C + YERN + N C
Sbjct: 334 GSHICDCPRGYERNASTPNGC 354
>03_05_0466 -
24602715-24603964,24605762-24605944,24606381-24607286,
24609446-24609516,24609737-24609846,24610073-24610108,
24610211-24610278,24610655-24610760,24610850-24610997,
24611091-24611218,24611319-24611454,24611924-24612072
Length = 1096
Score = 32.7 bits (71), Expect = 0.35
Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 1/88 (1%)
Frame = -1
Query: 637 SERCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSL-DGACECDSGYILS 461
+ CVNS +C+C + YE N N C + C+L + + Y
Sbjct: 588 NSHCVNSSNGMGYSCSCNQGYEGNPYLDNGCQ-------DIDECTLRRQGRQYEDVYPCK 640
Query: 460 NGTCIRNNTACSANCSAGGEECGLGSGC 377
+G CI + C AG + G GC
Sbjct: 641 HGICINTPGSYRCKCKAGTKPDGTNFGC 668
>08_02_1159 +
24773328-24773994,24775430-24775558,24776080-24776220,
24777393-24777487,24777545-24778606
Length = 697
Score = 31.5 bits (68), Expect = 0.81
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = -1
Query: 799 DCLCHDNYAMSNGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVC 650
DC CH Y N + C+ C+EP+K +C G ++ FVC
Sbjct: 247 DCQCHHGYK-GNASILNGCQDI---NECAEPEKYSCYGGLCINTPGAFVC 292
Score = 31.1 bits (67), Expect = 1.1
Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 12/158 (7%)
Frame = -1
Query: 802 NDCLCHDNYAMSNGTCAPVCRRA---CT--NGACSEPD--KCTCDDGYRLSPEDPFVCLP 644
N C + S + AP C A C NG ++ D +C C DGY +P C
Sbjct: 164 NSSACSASTNASAPSSAPECCSANSFCKGYNGTTADYDGYRCYCSDGYEGNPYVDGGCRD 223
Query: 643 VCSERCVNSHCSSPNTCTCFKDYERNDTNSNV-CYK--KCDGACENGRCSLDGACECDSG 473
+ C SP+ C+ D + + C+ K + + NG C C
Sbjct: 224 I-------DECKSPHIYPCYGDCKNTRGGYDCQCHHGYKGNASILNG-CQDINECAEPEK 275
Query: 472 YILSNGTCIRNNTACSANCSAG--GEECGLGSGCPSEQ 365
Y G CI A C G G+ G GC S +
Sbjct: 276 YSCYGGLCINTPGAFVCRCHDGSYGDPFTKG-GCRSSK 312
>02_05_0108 + 25903545-25904292,25904888-25904989,25905220-25905263
Length = 297
Score = 31.5 bits (68), Expect = 0.81
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 14/103 (13%)
Frame = -1
Query: 676 LSPEDPFVCLPVCSER----CVNSHCSSPNTCTCFKDYERND----TNSNVCYKKC---- 533
LSP D C+ R C N++ +S C+ Y+ D ++ Y+KC
Sbjct: 101 LSPGDCVACVRQTVARLGAVCANAYAASLQVDGCYVRYDAADFIGRADTTTAYRKCSSST 160
Query: 532 --DGACENGRCSLDGACECDSGYILSNGTCIRNNTACSANCSA 410
DGA + R + G + +GY LS ++ C + A
Sbjct: 161 SRDGAFLSSRDGVLGELQAAAGYKLSTSGTVQGVAQCLGDVPA 203
>01_01_0150 - 1344247-1345011
Length = 254
Score = 31.5 bits (68), Expect = 0.81
Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Frame = -1
Query: 790 CHDNYAMSNGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHC 611
C D + G C C+ AC P CDD Y + PF + C N+ C
Sbjct: 142 CDDE--LKPGQCFAACK-ACREAPGPFPGPLICDDVYWGADPGPFCTPRPWGDCCDNTTC 198
Query: 610 --SSPNTCTC 587
S P C+C
Sbjct: 199 TKSIPPICSC 208
>10_05_0080 - 8907628-8908182
Length = 184
Score = 31.1 bits (67), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -2
Query: 180 ASCAATLTGCCRPSPVTSRGATPTTSRRQTKP--NSLTKSP 64
A+ GC RPSP +SR + P+ + + +P SL +SP
Sbjct: 41 AAPTGCFAGCFRPSPTSSRSSPPSCNSQADRPASPSLIRSP 81
>09_03_0111 -
12440818-12441129,12441242-12441585,12441663-12441989,
12443444-12443602,12443687-12443784,12444745-12444821
Length = 438
Score = 30.7 bits (66), Expect = 1.4
Identities = 21/64 (32%), Positives = 26/64 (40%)
Frame = -1
Query: 631 RCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGT 452
RC SH N + N+ N Y C G C+N S D C C G + NG
Sbjct: 40 RCKCSHGYEGNPYIKDGCKDINECLDNATYP-CMGICKNTIGSFD--CSCYPGSYMKNGF 96
Query: 451 CIRN 440
C+ N
Sbjct: 97 CLPN 100
>01_01_0153 - 1352982-1353731
Length = 249
Score = 30.3 bits (65), Expect = 1.9
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 2/73 (2%)
Frame = -1
Query: 790 CHDNYAMSNGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHC 611
C+D S C C+ +C P K C+D Y + PF + C + C
Sbjct: 138 CNDELEPSQ--CTAACK-SCREAPGPFPGKLICEDIYWGADPGPFCTPRPWGDCCDKAFC 194
Query: 610 S--SPNTCTCFKD 578
+ +P TC C +
Sbjct: 195 NKMNPPTCRCMDE 207
>11_06_0629 + 25646268-25646591
Length = 107
Score = 29.9 bits (64), Expect = 2.5
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 613 SESSRSAQNRPAGRRKDPRDSTGSHRRTCTYRAPSTPHLCRPDGTQGR 756
+ESSR RP + R GSHR +R P L R +G +GR
Sbjct: 44 TESSRGRHRRPICGGRKARGGGGSHR----HRLLHPPDLAREEGEKGR 87
>10_08_0333 - 16850267-16851802
Length = 511
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Frame = -1
Query: 778 YAMSNGTCAPVCRRACTNG--ACSEPDKCTCDDGY 680
Y+ ++G C P +CTN A E D TC+D Y
Sbjct: 416 YSHNSGLCGPPLNISCTNASVASDERDCRTCEDQY 450
>09_02_0221 +
5962606-5963197,5963711-5963837,5963994-5964100,
5964185-5964328,5964700-5964822,5964921-5965103,
5965540-5965718,5965797-5965823
Length = 493
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 222 KKRSKKTKQAPATTASCAATLTGCCRPSPVTSRGATPTTSRR 97
K+ +K K+ A +S AA P PV TP+ S+R
Sbjct: 18 KQMQEKEKEKAAAASSSAAAAAKATNPKPVVVAANTPSASKR 59
>04_04_0963 -
29743363-29744450,29744729-29745043,29745116-29745477,
29745947-29746013,29746111-29746954
Length = 891
Score = 29.9 bits (64), Expect = 2.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -1
Query: 604 PNTCTCFKD-YERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTAC 428
PN C YE +D+ + + C NG SL A + + +NG N +
Sbjct: 744 PNDSNCESGKYENSDSLQDASPAELSEVCYNGNGSLQDASPAELSEVSNNG----NGSLQ 799
Query: 427 SANCSAGGEECGLGSG 380
A+ S E C G+G
Sbjct: 800 DASSSELSEVCNNGNG 815
>01_03_0017 +
11677029-11677100,11677992-11678030,11678169-11678341,
11679068-11679284,11679518-11679688,11679781-11679941,
11680025-11681069,11681320-11681466,11681547-11681774,
11681863-11682020,11682124-11682493
Length = 926
Score = 29.9 bits (64), Expect = 2.5
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -3
Query: 122 GLLRRPPADRRNRTHLRSPPTRRELLNQS 36
G+ RRPPA RR + H R P + +LN S
Sbjct: 417 GVPRRPPAGRRVKDHERYPKVVQLMLNNS 445
>09_04_0472 -
17895285-17896459,17897113-17897271,17897374-17897794,
17898520-17898552,17898902-17899384
Length = 756
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/64 (29%), Positives = 27/64 (42%)
Frame = -1
Query: 631 RCVNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGT 452
+C + + +P KD N+ N Y C G C+N + C C G + NG
Sbjct: 296 KCSDGYEGNPYVKDGCKDI--NECLDNATYP-CPGICKNTLGNF--TCSCYPGNYMMNGI 350
Query: 451 CIRN 440
CI N
Sbjct: 351 CIPN 354
>02_04_0452 + 23044190-23045227
Length = 345
Score = 29.1 bits (62), Expect = 4.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 429 HAVLFLMHVPLDSMYPESHSHAPSKEHRPFSQAPS 533
H L L H + SHSH+ S+ H P ++ P+
Sbjct: 166 HGCLLLHHAGHGHGHAHSHSHSHSRAHNPSTRPPT 200
>01_01_0491 +
3629025-3629051,3629679-3629778,3629947-3630015,
3630282-3630559
Length = 157
Score = 29.1 bits (62), Expect = 4.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -1
Query: 634 ERCVNSHCSSPNTCTCFKDYER 569
ERC++S S C CFK +R
Sbjct: 17 ERCISSQAESDGYCACFKGLQR 38
>07_03_1705 +
28848293-28848321,28848766-28848841,28848940-28849082,
28849297-28849383,28849492-28849575,28850224-28850380,
28850521-28850606,28850995-28851226,28851351-28851471,
28851610-28851746,28852086-28852202,28852612-28852660,
28852751-28852793,28852945-28853116,28853192-28853262,
28853365-28853458,28853608-28853820,28853851-28853859,
28853895-28853999,28854266-28854586,28854664-28854789
Length = 823
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 207 KTKQAPATTASCAATLTGCCRPSPVTSRGAT 115
KT +AP TT++ C SP+T RG T
Sbjct: 708 KTSEAPKTTSNGGEVGADVCDASPLTRRGQT 738
>04_04_1523 - 34148407-34150224
Length = 605
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = -1
Query: 625 VNSHCSSPNTCTCFKDYERNDTNSNVCYKKCDGAC 521
+N CS+P C KD+E D + V C +C
Sbjct: 97 INRSCSTPCLCPVSKDFEHKDRSGLVEMLGCSISC 131
>04_03_0130 - 11622139-11623325,11626144-11627116
Length = 719
Score = 28.7 bits (61), Expect = 5.7
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Frame = -1
Query: 700 CTCDDGYR----LSPEDPFVCLPVCSERCV 623
C C G+R L PEDP C +CS V
Sbjct: 303 CNCSKGFRGNPYLHPEDPSSCQGICSSTVV 332
>02_02_0030 - 6207784-6208154,6208286-6211310
Length = 1131
Score = 28.7 bits (61), Expect = 5.7
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = -1
Query: 730 TNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSE 632
+NG + D YRL DP LP+C E
Sbjct: 725 SNGVFGNASRAILDGNYRLCVNDPGYSLPLCRE 757
>11_06_0368 + 22756988-22758205
Length = 405
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Frame = -1
Query: 715 SEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSH-CSSP 602
S P++ Y P DP C CS CV H C SP
Sbjct: 35 SAPERDQTAAPYGTVPPDPLSCATDCSPDCVFYHLCPSP 73
>11_02_0082 -
8088169-8088284,8088613-8088697,8090344-8090442,
8090537-8090609,8090694-8090804,8090901-8091074,
8091184-8091574,8091662-8092283,8092379-8093251,
8093294-8093800
Length = 1016
Score = 28.3 bits (60), Expect = 7.5
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -2
Query: 198 QAPATTASCAATLTGCCRPSPVTSRGATPTTSRRQTKPNSLTKSPYETRATE 43
QAPA T LT P+P + P S+ + P T P TRAT+
Sbjct: 566 QAPAATPPQDPALTPPRAPTPTPPQAPLPAPSKSRAPP---TPPPAHTRATK 614
>10_01_0296 + 3069605-3070535,3071127-3071294,3075307-3076454
Length = 748
Score = 28.3 bits (60), Expect = 7.5
Identities = 27/95 (28%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Frame = -1
Query: 724 GACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERND------ 563
G S C + P + + C+ SE CVNS C C K YE N
Sbjct: 252 GNSSASSSCPAPEVREKMPPE-YACVSDNSE-CVNSTNGPGYYCKCSKGYEGNPYLVGGC 309
Query: 562 TNSNVCYKK----CDGACENGRCSLDGACECDSGY 470
+ + C + C G C N D C+C +GY
Sbjct: 310 NDIDECARSDEYPCHGDCRN--TVGDYHCKCRTGY 342
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 28.3 bits (60), Expect = 7.5
Identities = 29/112 (25%), Positives = 47/112 (41%)
Frame = -1
Query: 781 NYAMSNGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCVNSHCSSP 602
++A+++ TC RR T+ AC + C D L+ + C +C N + +P
Sbjct: 239 DWAITSKTCTE-SRRNKTSYACIS-NNSQCIDN--LTNAQGYRC------KCSNGYEGNP 288
Query: 601 NTCTCFKDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGTCI 446
KD + + +N Y C G C N + C C G + NG C+
Sbjct: 289 YIKDGCKDID--ECLNNATYP-CKGICTNTLGNF--TCSCSPGSYMMNGDCM 335
>08_02_1138 +
24631919-24632248,24634100-24634502,24634788-24634982,
24635384-24635838,24636119-24636349,24636891-24637123,
24637899-24637971
Length = 639
Score = 28.3 bits (60), Expect = 7.5
Identities = 17/42 (40%), Positives = 18/42 (42%)
Frame = -1
Query: 178 VMCSNPNRLLQTQPGDVTRGYSDDLPPTDETELTYEVPLRDE 53
VM N T P GYS LPPTD E P RD+
Sbjct: 474 VMSGNKEAFEATSP---RHGYSSLLPPTDRNETDRRRPDRDD 512
>05_01_0259 + 1990180-1990428,1990768-1991526
Length = 335
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/58 (25%), Positives = 26/58 (44%)
Frame = -2
Query: 192 PATTASCAATLTGCCRPSPVTSRGATPTTSRRQTKPNSLTKSPYETRATEPILMWNQQ 19
P A+ AA L C P P + G ++ + T PN L+ ++ A ++ + Q
Sbjct: 222 PTMNATFAAALKKLC-PPPASGGGGRAVSNNQVTDPNVLSNQYFKNVAAGEVMFTSDQ 278
>04_03_0602 - 17884667-17885817,17885946-17886113,17886413-17887313
Length = 739
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 697 TCDDGYRLSPEDPFVCLPVCSERCVNSHCSSPNTCTCFKDYERN 566
+C++ ++ D + C SE C NS TC C K YE N
Sbjct: 250 SCEEAWKKM--DSYACKSTNSE-CFNSTNGPGYTCNCSKGYEGN 290
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 28.3 bits (60), Expect = 7.5
Identities = 23/70 (32%), Positives = 33/70 (47%)
Frame = +1
Query: 475 RSRTRTLRPKSTGHFRKLHRISCNKRSNSYRYARSL*STCTY*GMNSESSRSAQNRPAGR 654
RSR+R+ R S + R R + RS + +RS + T N +SRS P
Sbjct: 595 RSRSRS-RSDSDRYSRSPKRSRRHSRSRTRSRSRSRSRSYT---RNRRASRSRSRSPGAS 650
Query: 655 RKDPRDSTGS 684
R+ R +TGS
Sbjct: 651 RRHERSATGS 660
>01_01_0878 +
6888459-6889227,6890498-6890523,6891679-6891843,
6892415-6892494,6893001-6893154,6893808-6893864,
6894103-6894170,6894238-6894344,6894475-6894542,
6894885-6895007
Length = 538
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = -2
Query: 225 SKKRSKKTKQAPATTASCAATLT 157
SKK+SKK K +PA A AA T
Sbjct: 4 SKKKSKKKKPSPAAAAGAAAPTT 26
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 27.9 bits (59), Expect = 9.9
Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 10/111 (9%)
Frame = -1
Query: 733 CTNGACSEPDKCTCDDGYRLSP------EDPF----VCLPVCSERCVNSHCSSPNTCTCF 584
C + +C C DGY+ +P E PF + LP+ +RC S F
Sbjct: 280 CVDATNGRGYRCKCSDGYKGNPYITDGCEGPFPAILIPLPLQIKRCRKS--------IIF 331
Query: 583 KDYERNDTNSNVCYKKCDGACENGRCSLDGACECDSGYILSNGTCIRNNTA 431
D + C G C N + S C C G L +G C +++++
Sbjct: 332 LSLFLADIDECQDAHPCTGICINTQGSY--TCTCQRGKHLIDGVCKQSSSS 380
>08_02_1312 +
26055372-26056056,26056935-26057187,26057277-26058081,
26058828-26058952,26059081-26059165,26059473-26059626,
26059724-26059761,26059842-26060109,26060257-26060380,
26060508-26060868,26061904-26062272,26062528-26062609,
26063042-26063193
Length = 1166
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -2
Query: 228 NSKKRSKKTKQAPATTASCAATLTGCCR 145
+S ++ T P +ASC A L CCR
Sbjct: 17 SSSPYARSTDDGPVASASCDARLERCCR 44
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 589 CFKDYERNDTNSNVCYKKCDGACENGRCSL 500
CF +DT ++ Y K G C G C +
Sbjct: 1231 CFIVLRNDDTTADFSYNKFQGVCSRGGCGV 1260
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/69 (31%), Positives = 26/69 (37%)
Frame = +1
Query: 487 RTLRPKSTGHFRKLHRISCNKRSNSYRYARSL*STCTY*GMNSESSRSAQNRPAGRRKDP 666
R LR K GH+RK R S S R+ R Y G + S R G +
Sbjct: 156 RDLRKKLFGHYRKPQRGRSRSPSPSPRHRRERHDRDDYRGRDDYS--GGGGRRGGSSRHE 213
Query: 667 RDSTGSHRR 693
R G RR
Sbjct: 214 RHDDGGRRR 222
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,270,210
Number of Sequences: 37544
Number of extensions: 503947
Number of successful extensions: 2154
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 1998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2148
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -