Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d05
         (802 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    25   0.82 
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    25   1.1  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    23   2.5  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           23   4.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   4.4  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   5.8  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    22   5.8  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   7.6  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   7.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.6  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.6  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 25.0 bits (52), Expect = 0.82
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = -1

Query: 766 NGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCLPVCSERCV 623
           NG C+ +C  A    + S    C C DG +L   D  +C+   S   V
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGLMCVEKVSTTIV 86


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 766 NGTCAPVCRRACTNGACSEPDKCTCDDGYRLSPEDPFVCL 647
           NG C+ +C  A    + S    C C DG +L   D  +C+
Sbjct: 40  NGHCSHLCLPAPRINSKSPLLSCACPDGLKLL-SDGLMCV 78


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 442 NNTACSANCSAGGEECGLGS--GCPSEQTHF 356
           N++AC+ANC + G+  G     GC   +T F
Sbjct: 56  NDSACAANCLSLGKAGGHCEKVGCICRKTSF 86


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 442 NNTACSANCSAGGEECG 392
           N++AC+ANC + G+  G
Sbjct: 31  NDSACAANCHSLGKAGG 47


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 8/38 (21%), Positives = 20/38 (52%)
 Frame = +2

Query: 41  GSVALVS*GDFVSEFGFVCRREVVGVAPRDVTGLGLQQ 154
           G+  ++   D+     ++C+   +G   RD++ L +Q+
Sbjct: 456 GTKLIIKNVDYADTGAYMCQASSIGGITRDISSLVVQE 493


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 703 KCTCDDGYRLSPEDP 659
           +C CD GY  + +DP
Sbjct: 295 ECRCDPGYFRAEKDP 309


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 442 NNTACSANCSAGGEECG 392
           N++AC+ANC + G+  G
Sbjct: 56  NDSACAANCLSLGKAGG 72


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 571 RNDTNSNVCYKKCDGACE 518
           R    SN  + +CDG C+
Sbjct: 34  RGKCPSNEIFSRCDGRCQ 51


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = -1

Query: 571 RNDTNSNVCYKKCDGACE 518
           R    SN  + +CDG C+
Sbjct: 34  RGKCPSNEIFSRCDGRCQ 51


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 133 DVTRGYSDDLPPTDETE 83
           +++ G +DD+PP  E E
Sbjct: 307 ELSTGMNDDIPPETEEE 323


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 228  NSKKRSKKTKQAPATTASCAAT 163
            + K+   KTK+    TA+ AAT
Sbjct: 1092 DQKQSDDKTKETSTVTAAAAAT 1113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 214,212
Number of Sequences: 438
Number of extensions: 4464
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25367793
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)