Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14d03
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    27   0.21 
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.21 
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    27   0.21 
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    23   2.0  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        23   3.4  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   3.4  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    22   6.0  
AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory recept...    21   8.0  
AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory recept...    21   8.0  

>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 323 SIIYQWRYNHLLKL-RLLHSKQ 385
           S+I +WRYNH+L + R++ S Q
Sbjct: 140 SLITKWRYNHVLMVQRMIGSSQ 161


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 323 SIIYQWRYNHLLKL-RLLHSKQ 385
           S+I +WRYNH+L + R++ S Q
Sbjct: 300 SLITKWRYNHVLMVQRMIGSSQ 321


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 11/22 (50%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
 Frame = +2

Query: 323 SIIYQWRYNHLLKL-RLLHSKQ 385
           S+I +WRYNH+L + R++ S Q
Sbjct: 300 SLITKWRYNHVLMVQRMIGSSQ 321


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = -3

Query: 218 FLLFGG-SVARIFTSIQETGDSIIILTYCVSTIAN 117
           F++F    +  I+T ++E+G    + TY VS   N
Sbjct: 14  FIIFVSLEIYHIYTVVEESGFENFVKTYLVSDFEN 48


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +3

Query: 213 QEAGYKRQLTSAAIFVVRSY 272
           + A  ++Q+TSAA  +VRSY
Sbjct: 271 RRARLRKQITSAATPLVRSY 290


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = +3

Query: 345 ITTY*N*DYCTVNR-QKY----SALHWSATIMEY*SCYHCRL 455
           +TTY   DYCTV R Q++    S  H+        +  HC L
Sbjct: 499 VTTYLMFDYCTVLRVQRFNNYQSLAHYLRVFFTVFNVVHCYL 540


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 18  IPIVLSTLWFFLAFYFN 68
           I +V+S L  F+A++FN
Sbjct: 54  IKLVVSVLMDFIAYFFN 70


>AM292339-1|CAL23151.2|  387|Tribolium castaneum gustatory receptor
           candidate 18 protein.
          Length = 387

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 136 VFQPLPMVLLFYKCC 92
           V++PLP+VL   K C
Sbjct: 269 VYKPLPIVLSIVKNC 283


>AM292338-1|CAL23150.2|  372|Tribolium castaneum gustatory receptor
           candidate 17 protein.
          Length = 372

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 136 VFQPLPMVLLFYKCC 92
           V++PLP+VL   K C
Sbjct: 269 VYKPLPIVLSIVKNC 283


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,684
Number of Sequences: 336
Number of extensions: 4518
Number of successful extensions: 16
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)