Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d03
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr... 29 0.71
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 27 2.9
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 2.9
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 26 5.0
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 26 5.0
SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces pombe... 26 5.0
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 26 6.6
SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyce... 26 6.6
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII... 25 8.7
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 8.7
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 25 8.7
SPAC17C9.10 |stm1||G-protein coupled receptor Stm1|Schizosacchar... 25 8.7
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb... 25 8.7
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 25 8.7
>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 877
Score = 29.1 bits (62), Expect = 0.71
Identities = 23/120 (19%), Positives = 45/120 (37%)
Frame = -3
Query: 566 NIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFL 387
N+ GV+ + T +F+ S + G ++A L + +
Sbjct: 431 NLIGVFFHAYPATGSFSRSAINAKSGVRTPLGGIFTAGVVVLALYCLTGAFYYIPNAVLS 490
Query: 386 SVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFITCFLLF 207
+V V L+ + T + W MQ + I + A + + ++ +NG + LLF
Sbjct: 491 AVIIHSVFDLIIPWRQTLLFWRMQPLEALIFICAVFVSVFSSIENGIYTAVCLSAALLLF 550
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 516 SKVRSDSKQLQINSIN--IDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWYI 689
S+ R+ K L + +N + + T L +FEN ++ P + DS +F+ W++
Sbjct: 2358 SRYRAVKKILDLLKVNQGLSNLVTKLLCSFENYVSLAEWNPRSKVDSTSFSRFPGYKWFL 2417
Query: 690 K 692
K
Sbjct: 2418 K 2418
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.9
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = -3
Query: 389 LSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFIT 222
L VY I++ + + ++++ T P ++ +I NYK+GS L FIT
Sbjct: 736 LDVYLKILNDWEGALSYCNSVYSIDGETEPYYMLLA--EISKNYKSGSLNILDFIT 789
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +3
Query: 519 KVRSDSKQLQINSINIDSFGTLTL*NFENLWHFYQYGP*NDADSETFAECGFETWY 686
+V S + L + + NI GTLT + ++W+ + N + + WY
Sbjct: 4 RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGRRLENISWRLWY 59
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 261 LQKWQHWSTVVYNLLPVVWR*CSKNLHINSRNWRLHYYSDLL 136
++ W + LP+V + CS+ + R W Y DL+
Sbjct: 191 MEDLHEWLFSIRQKLPLVGKSCSQQIDEARRRWAREYKEDLV 232
>SPAC15E1.02c |||DUF1761 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 148
Score = 26.2 bits (55), Expect = 5.0
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Frame = -3
Query: 461 AIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVL--VSGYTSTDILWTMQAVTVPIILI 288
A+Q+ IAAL+ G +KG F+ +Y S L V Y T+ T + I +
Sbjct: 71 AVQSYSIAALLQLTGTVTLKGAFFVGLYVFGASGLPDVVDYMFTESRGTPYILVKTISSL 130
Query: 287 AKSI 276
KS+
Sbjct: 131 VKSV 134
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 6.6
Identities = 25/118 (21%), Positives = 49/118 (41%), Gaps = 4/118 (3%)
Frame = -3
Query: 590 QSKSAEGI-NIYGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHY-- 420
Q A G+ N+ G++ + T +F+ S + A + I TA + L L+
Sbjct: 408 QELIAMGVTNLIGIFFNAYPATGSFSRSAIKA---KAGVKTPIAGIFTAAVVILSLYCLT 464
Query: 419 -GGAPMKGGIFLSVYCAIVSVLVSGYTSTDILWTMQAVTVPIILIAKSIQIGTNYKNG 249
+ I +V V+ L+ T + W +Q + I I+ + + ++ +NG
Sbjct: 465 DAFYYIPNAILSAVIIHAVTDLILPMKQTILFWRLQPLEACIFFISVIVSVFSSIENG 522
>SPAC12G12.12 |||NST UDP-galactose transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.8 bits (54), Expect = 6.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 49 FLPFTLIVFSTFQYHNICK 105
FL F L+++ F YH+I K
Sbjct: 300 FLGFVLLIYGIFTYHSIIK 318
>SPAC144.09c |sfc2||RNA polymerase III transcription factor
TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 417 TIMEY*SCYHCRLDG*KCSFTPCTEWETHYIAI 515
T +E YHC ++G K SFT + + H I
Sbjct: 228 TTLEERKTYHCPMEGCKKSFTRSSALKKHISVI 260
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 560 YGVYLELFAITANFAYSYVMGFPFSAWGEGTFLAIQTAM 444
YGV L + A AY Y MG+P + E ++ A+
Sbjct: 309 YGVSLNHSSSKAAIAYMYFMGYPVAENTESITKLLENAL 347
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 216 PVVWR*CSKNLHINSRNWRLHYYSD 142
PV+ +KNL + ++NW LH D
Sbjct: 240 PVILATKAKNLRLTTKNWGLHAAHD 264
>SPAC17C9.10 |stm1||G-protein coupled receptor
Stm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 8.7
Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Frame = -3
Query: 611 PQIFKILQSKSAEGINIYGVYLELFAITANFAYSY-VMGFPFSAWGEGTF 465
PQI K ++KS EG++I ++ L A N +Y++ ++ FP S + T+
Sbjct: 195 PQIIKNHKAKSTEGLSI--IFFVL-ASVGNTSYAFSILVFPASDYLNYTY 241
>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1136
Score = 25.4 bits (53), Expect = 8.7
Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 1/15 (6%)
Frame = +2
Query: 311 QPAW-SIIYQWRYNH 352
QP W +I++ WRY H
Sbjct: 1016 QPCWYNILFSWRYKH 1030
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 303 SYHSHSQVNPNRNELQKWQHWSTVV 229
SY +HS N RN QH+ST +
Sbjct: 97 SYTNHSPANLTRNSSFNHQHYSTTL 121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,526
Number of Sequences: 5004
Number of extensions: 72423
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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