Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14d03
(751 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41996-4|AAA83473.1| 238|Caenorhabditis elegans Hypothetical pr... 144 4e-35
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 31 1.2
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 31 1.2
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 31 1.2
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 31 1.2
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 31 1.2
U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical pr... 29 2.7
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr... 29 2.7
U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine rece... 29 2.7
AF016415-6|AAB65267.1| 283|Caenorhabditis elegans Lysozyme prot... 29 2.7
Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical pr... 28 8.1
Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical p... 28 8.1
>U41996-4|AAA83473.1| 238|Caenorhabditis elegans Hypothetical
protein F38E1.9 protein.
Length = 238
Score = 144 bits (350), Expect = 4e-35
Identities = 73/209 (34%), Positives = 111/209 (53%)
Frame = -3
Query: 707 LKYNFLDVPCFKSTXXXXXXXXXXXXXXXXXVPQIFKILQSKSAEGINIYGVYLELFAIT 528
+ +NF C K+ VPQI KI ++SA+GI+ L L
Sbjct: 19 INFNFFHPTCPKAVLSRGLGFAITLGSILLFVPQILKIQAARSAQGISAASQLLALVGAI 78
Query: 527 ANFAYSYVMGFPFSAWGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCAIVSVLVSG 348
+YSY GF FS WG+ F+A+Q +I + + G M FL + A+ +VS
Sbjct: 79 GTASYSYRSGFVFSGWGDSFFVAVQLVIIILQIFLFSGQTMLSVGFLGIVSAVAYGVVSK 138
Query: 347 YTSTDILWTMQAVTVPIILIAKSIQIGTNYKNGSTGQLSFITCFLLFGGSVARIFTSIQE 168
L +Q +PI++++K +QI NY+ STGQLS I+ FL F G++AR+FTS+Q+
Sbjct: 139 SIPMQTLTAVQTAGIPIVVVSKLLQISQNYRAQSTGQLSLISVFLQFAGTLARVFTSVQD 198
Query: 167 TGDSIIILTYCVSTIANGAIVLQMLWYWN 81
TGD ++I++Y + + NG I Q YW+
Sbjct: 199 TGDMLLIVSYSTAAVLNGLIFAQFFMYWS 227
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 482 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 321
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1179
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 482 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 321
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1125 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1179
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 482 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 321
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1298
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 482 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 321
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 731 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 785
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Frame = -3
Query: 482 WGEGTFLAIQTAMIAALVLHYGGAPMKGGIFLSVYCA--IVSVLVSGYTSTDILWT 321
W F+ + ++ ALV +GG + G FL ++ A ++ +L GYT +LWT
Sbjct: 1244 WNRFDFVTVVGSITDALVTEFGGHFVSLG-FLRLFRAARLIRLLQQGYTIRILLWT 1298
>U40933-9|ABD63229.1| 867|Caenorhabditis elegans Hypothetical
protein F20D12.1b protein.
Length = 867
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 474 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 379
+N+ +HPN DSSF+ + + S++ NI CL
Sbjct: 496 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 527
>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
protein F20D12.1a protein.
Length = 1030
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/32 (40%), Positives = 21/32 (65%)
Frame = -2
Query: 474 RNIFSHPNGNDSSFSTPLWWRSNEGRNISVCL 379
+N+ +HPN DSSF+ + + S++ NI CL
Sbjct: 659 KNLVTHPNYRDSSFTPFVLFISDDVPNIHECL 690
>U29097-8|AAA68415.1| 341|Caenorhabditis elegans Serpentine
receptor, class a (alpha)protein 28 protein.
Length = 341
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = -2
Query: 408 NEGRNISVCLLCNSLSFSKWLYLH*YIMDHAGCHCSYHSHSQVNPNRNEL 259
+E NI +C+L L F+ +LY+H I + H Y+ +S+ N L
Sbjct: 186 HEVNNIRICVLIVLLFFAIFLYIHNKIREKRMVHNVYNINSRYKSYENYL 235
>AF016415-6|AAB65267.1| 283|Caenorhabditis elegans Lysozyme protein
7 protein.
Length = 283
Score = 29.5 bits (63), Expect = 2.7
Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 7/116 (6%)
Frame = -3
Query: 404 KGGIFLSVYCAIVSVL-VSGYTSTDIL---WTMQAVTVPIILIAKSIQIGTNYKNGSTGQ 237
K G+ + +Y V GY D + T +A+TV I I + TN+ N +
Sbjct: 105 KAGLGIEIYMTPQPVSNKQGYQQLDEIIQGLTARAITVRAIWI--QVTSPTNWPNNANSN 162
Query: 236 LSFITCFLLFG---GSVARIFTSIQETGDSIIILTYCVSTIANGAIVLQMLWYWNV 78
++FI + G I+TS + +T S I N + LWYWNV
Sbjct: 163 INFINSIVSRARQSGLTVGIYTSYYDWNQ----ITTGWSNIGNDVL----LWYWNV 210
>Z77654-3|CAB01129.1| 340|Caenorhabditis elegans Hypothetical
protein C50B8.3 protein.
Length = 340
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 440 LSLPFGWLKMFLHPMH*MGNPLHSYK 517
LS+ F W F HP+H G P Y+
Sbjct: 239 LSMDFTWGDSFSHPLHTHGGPYWQYE 264
>Z50874-10|CAA90770.1| 302|Caenorhabditis elegans Hypothetical
protein R10E4.11 protein.
Length = 302
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 741 VVSQKCYNEYFSKVQFS*CTMFQIHTQQRSRNRHH 637
V + K Y++ FS V + +M + TQQR+ R H
Sbjct: 37 VETNKKYDDIFSSVMENAISMHVVMTQQRAEKRRH 71
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,259,701
Number of Sequences: 27780
Number of extensions: 407366
Number of successful extensions: 954
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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