Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c24
         (784 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase Pin1|Schi...   138   1e-33
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    39   0.001
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    38   0.002
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    33   0.046
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    32   0.081
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    32   0.081
SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|...    26   5.3  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    26   7.0  
SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein Bqt1|Sc...    26   7.0  

>SPCC16C4.03 |pin1||peptidyl-prolyl cis-trans isomerase
           Pin1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 175

 Score =  138 bits (333), Expect = 1e-33
 Identities = 74/170 (43%), Positives = 102/170 (60%), Gaps = 22/170 (12%)
 Frame = -3

Query: 701 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEA-------------------PADAG--- 588
           LP  W ++ SRS    Y+ NT T +S WE P A                   P +A    
Sbjct: 6   LPKPWIVKISRSRNRPYFFNTETHESLWEPPAATDMAALKKFIANELQESVTPTEASNSP 65

Query: 587 EVRCSHILVKHAESRRPTSWREEKITRTKEEALELIKGYRKQIVANDAQFDEIALKYSDC 408
           ++R SH+LVKH ESRRP+SW+EE ITR+KEEA +L + Y + + +      ++A+K SDC
Sbjct: 66  KIRASHLLVKHRESRRPSSWKEEHITRSKEEARKLAEHYEQLLKSGSVSMHDLAMKESDC 125

Query: 407 SSAKRGGDLGMFGKGQTQLAFEEESFKLKIGQLSKPIETESGLHIILRTA 258
           SSA+RGG+LG FG+ + Q  FE+ +F LK G++S  +ET SG HII R A
Sbjct: 126 SSARRGGELGEFGRDEMQKPFEDAAFALKPGEISGVVETSSGFHIIQRHA 175


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 38.7 bits (86), Expect = 0.001
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 597
           PLP GWEMR + +T   Y+++  TK + W+ P  P+
Sbjct: 346 PLPSGWEMRLT-NTARVYFVDHNTKTTTWDDPRLPS 380



 Score = 38.3 bits (85), Expect = 0.001
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -3

Query: 701 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAG 588
           LP GWE RT  + G TYY++  T+ + W RP   + AG
Sbjct: 207 LPPGWERRTD-NLGRTYYVDHNTRSTTWIRPNLSSVAG 243


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = -3

Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 597
           PLP GWEMR + S    Y+++  TK + W+ P  P+
Sbjct: 365 PLPSGWEMRLTNS-ARVYFVDHNTKTTTWDDPRLPS 399



 Score = 36.7 bits (81), Expect = 0.004
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = -3

Query: 764 RNLHLPA*ILNIRMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAP 600
           +N HLP       M +++   LP GWEMR +  TG  Y+++  T+ + W  P  P
Sbjct: 287 QNRHLPDDSNPSLMQSDSGNDLPFGWEMRYT-DTGRPYFVDHNTRTTTWVDPRNP 340



 Score = 35.5 bits (78), Expect = 0.009
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = -3

Query: 701 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
           LP GWE R   S G TYY++  T+ + W RP
Sbjct: 238 LPPGWERRAD-SLGRTYYVDHNTRTTTWTRP 267


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 33.1 bits (72), Expect = 0.046
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -3

Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
           PLP GW    + S G+ YY N   KKS ++RP
Sbjct: 4   PLPPGWTEHKAPS-GIPYYWNAELKKSTYQRP 34


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = -3

Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
           PLP GWEMR S    + Y+++  TK + W  P
Sbjct: 243 PLPAGWEMRLSEDYHV-YFVDHSTKTTTWSDP 273


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 32.3 bits (70), Expect = 0.081
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -3

Query: 695 DGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAGEVRCSHILVK-HAESRRPTSWREE 519
           D  E++T  S    YY N+ T+KS WE+PE   +  E + S +  K +A +     W   
Sbjct: 35  DWHEVKTEDSR--VYYYNSVTRKSVWEKPEELMNDFEKKLSKLAWKEYATADGKKYWYN- 91

Query: 518 KITRTKEEALELIKGYRKQIVANDAQ 441
               T+E   ++   Y+  +V    Q
Sbjct: 92  --VNTRESVWDIPDEYKAALVDEPEQ 115


>SPBC365.12c |ish1||LEA domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 684

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 200 SIVFYIFLFSLSKYKMNKT 256
           +IVFYIF +  S Y+ N T
Sbjct: 14  AIVFYIFTYGFSTYRKNDT 32


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 200 NTCEVVGNSLKN 165
           NTCE+ GN LKN
Sbjct: 153 NTCEICGNQLKN 164


>SPAC6G9.13c |bqt1|mug23, rec26|bouquet formation protein
           Bqt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 132

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 108 KTKYFMLVWIPNIKTYQMFTVQEQS 34
           K +Y++L W   ++ YQ  TVQ  S
Sbjct: 91  KLRYYVLPWSRRLQGYQSITVQNGS 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,116,375
Number of Sequences: 5004
Number of extensions: 62694
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)