Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c24
         (784 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           48   2e-07
AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    28   0.37 
AJ459962-1|CAD31061.1|  685|Anopheles gambiae prophenoloxidase 9...    25   3.5  
AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.         24   6.1  
U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic aci...    23   8.1  
AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcript...    23   8.1  

>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 48.4 bits (110), Expect = 2e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)
 Frame = -3

Query: 701 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 597
           LP GWE R++++ G TYY+N YTK +QW RP  PA
Sbjct: 163 LPRGWEERSAQN-GRTYYVNHYTKTTQWSRPTEPA 196



 Score = 29.9 bits (64), Expect = 0.093
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -3

Query: 725 MSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
           ++ E   PLP GWE R + S G  Y+++   + +Q+  P
Sbjct: 368 LTTETLGPLPHGWEQRKTAS-GRVYFVDHNNRTTQFTDP 405



 Score = 28.3 bits (60), Expect = 0.28
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 686 EMRTSRSTGMTYYLNTYTKKSQWERPEAPAD 594
           E+RT++  G  Y+ +  TK+S W  P  P D
Sbjct: 333 EIRTTQQ-GQVYFYHIPTKQSTWHDPRIPRD 362


>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
            channel alpha subunitprotein.
          Length = 2139

 Score = 27.9 bits (59), Expect = 0.37
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
 Frame = -3

Query: 365  GQTQLAFEEESFKLKIGQLSKPIETESGLHIILRTA*SYSFY-TLIMKIKKYKKQ*NTCE 189
            G+ +L    +   L  G L K I+  + L + +     ++ +  L  K KK K+  N  +
Sbjct: 1102 GENELELTPDDI-LADGLLKKGIKEHNQLEVAIGDGMEFTIHGDLKNKAKKNKQIMNNSK 1160

Query: 188  VVGNSLKN*Q 159
            V+GNS+ N Q
Sbjct: 1161 VIGNSISNHQ 1170


>AJ459962-1|CAD31061.1|  685|Anopheles gambiae prophenoloxidase 9
           protein.
          Length = 685

 Score = 24.6 bits (51), Expect = 3.5
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +2

Query: 347 KLAESVLSQTYPGHH 391
           KL  S L++TYPG H
Sbjct: 274 KLLNSALNRTYPGRH 288


>AY578796-1|AAT07301.1|  437|Anopheles gambiae Gbb-60A protein.
          Length = 437

 Score = 23.8 bits (49), Expect = 6.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 653 YYLNTYTKKSQWERPEAPADAGEVR 579
           + LN Y +  Q E  +APA AG +R
Sbjct: 92  FLLNVYDQLQQ-EETDAPAGAGRIR 115


>U03849-1|AAA53488.1|  388|Anopheles gambiae putative nucleic acid
           binding protein protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 433 KLPSSILTARLLSVVVTWVCLG 368
           KLP  ++ A L +V + W C+G
Sbjct: 45  KLPPELIDAVLSNVDLHWSCIG 66


>AB090818-2|BAC57912.1|  988|Anopheles gambiae reverse transcriptase
           protein.
          Length = 988

 Score = 23.4 bits (48), Expect = 8.1
 Identities = 10/40 (25%), Positives = 17/40 (42%)
 Frame = -3

Query: 632 KKSQWERPEAPADAGEVRCSHILVKHAESRRPTSWREEKI 513
           +K QWE    P +    +   I+ +    R P  W E ++
Sbjct: 362 RKQQWEGARVPMERDANKLQFIVNELFLERPPMEWPETEV 401


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 772,433
Number of Sequences: 2352
Number of extensions: 14562
Number of successful extensions: 42
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81913191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)