Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c24
(784 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024746-15|AAF60409.1| 168|Caenorhabditis elegans Hypothetical... 149 2e-36
AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain pro... 41 9e-04
AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain pro... 41 9e-04
AL117203-11|CAB55116.1| 126|Caenorhabditis elegans Hypothetical... 40 0.002
AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical ... 35 0.057
AL034392-2|CAA22305.1| 120|Caenorhabditis elegans Hypothetical ... 35 0.075
U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical pr... 33 0.30
U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical pr... 33 0.30
Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical pr... 32 0.53
Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 31 1.2
U58758-6|AAO38577.1| 604|Caenorhabditis elegans Hypothetical pr... 31 1.2
U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical pr... 31 1.2
U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human a... 31 1.2
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 31 1.2
Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical pr... 30 2.1
U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone methyl... 29 3.7
U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone methyl... 29 3.7
Z78016-6|CAB01441.1| 336|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical pr... 28 6.6
>AC024746-15|AAF60409.1| 168|Caenorhabditis elegans Hypothetical
protein Y110A2AL.13 protein.
Length = 168
Score = 149 bits (362), Expect = 2e-36
Identities = 76/161 (47%), Positives = 106/161 (65%), Gaps = 15/161 (9%)
Frame = -3
Query: 701 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA-----DAGEVRCSHILVKHAESRRP 537
LP GWE R SRS YY NT T +SQWERP+ A + V+C H+LVKH SR P
Sbjct: 6 LPAGWEKRQSRSNDRVYYFNTATGRSQWERPDESAFGKGSELKSVQCLHLLVKHDGSRNP 65
Query: 536 TSWREEKITRTKEEALELIKG-------YRKQI--VAN-DAQFDEIALKYSDCSSAKRGG 387
+SWR + ITR+K++A+ ++K Y K++ +N + +F E+A ++SDCSSAKRGG
Sbjct: 66 SSWRSDHITRSKDDAINILKSADLRNFHYEKELKDASNIEGKFRELAKQFSDCSSAKRGG 125
Query: 386 DLGMFGKGQTQLAFEEESFKLKIGQLSKPIETESGLHIILR 264
DLG F + Q Q FE+ SF L+IG++S ++T SG+H+I R
Sbjct: 126 DLGPFERRQMQKPFEDASFALEIGEMSDIVDTSSGVHLIYR 166
>AC024847-5|AAN73850.1| 792|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform b
protein.
Length = 792
Score = 41.1 bits (92), Expect = 9e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3
Query: 710 EPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
E LPDGWEMR + G YY++ TK + WERP
Sbjct: 218 EEQLPDGWEMRFDQY-GRKYYVDHTTKSTTWERP 250
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
PLP+GWE R +T Y++N + +QWE P
Sbjct: 325 PLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDP 356
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEA 603
PLP GWEMR G YY++ T+ + W+RP A
Sbjct: 254 PLPQGWEMRRD-PRGRVYYVDHNTRTTTWQRPTA 286
Score = 33.9 bits (74), Expect = 0.13
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 728 RMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAG 588
R ++ PLPDGWEMR + G+ ++++ +K + + P G
Sbjct: 357 RTQGGSDQPLPDGWEMRFTEQ-GVPFFIDHQSKTTTYNDPRTGKPVG 402
>AC024847-4|AAN73849.1| 794|Caenorhabditis elegans Ww domain
protein (e3 ubiquitinligase) protein 1, isoform a
protein.
Length = 794
Score = 41.1 bits (92), Expect = 9e-04
Identities = 18/34 (52%), Positives = 22/34 (64%)
Frame = -3
Query: 710 EPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
E LPDGWEMR + G YY++ TK + WERP
Sbjct: 218 EEQLPDGWEMRFDQY-GRKYYVDHTTKSTTWERP 250
Score = 40.3 bits (90), Expect = 0.002
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -3
Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAG 588
PLP+GWE R +T Y++N + +QWE P G
Sbjct: 325 PLPEGWEKRQDPNTSRMYFVNHVNRTTQWEDPRTQGFRG 363
Score = 39.1 bits (87), Expect = 0.004
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEA 603
PLP GWEMR G YY++ T+ + W+RP A
Sbjct: 254 PLPQGWEMRRD-PRGRVYYVDHNTRTTTWQRPTA 286
Score = 33.1 bits (72), Expect = 0.23
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 713 NEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPADAG 588
++ PLPDGWEMR + G+ ++++ +K + + P G
Sbjct: 364 SDQPLPDGWEMRFTEQ-GVPFFIDHQSKTTTYNDPRTGKPVG 404
>AL117203-11|CAB55116.1| 126|Caenorhabditis elegans Hypothetical
protein Y48C3A.16 protein.
Length = 126
Score = 39.9 bits (89), Expect = 0.002
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 6/65 (9%)
Frame = -3
Query: 443 QFDEIALKYSDCSSAKRGGDLGMFGKGQTQLAFEEESFKLKIGQLSKPI------ETESG 282
+F+E+A +YS+ A+ GGDLG +G F++ +F L KPI +T+ G
Sbjct: 58 KFNEVAAQYSE-DKARSGGDLGWMTRGSMVGPFQDAAFALSNSSCDKPIYTDPPVKTKFG 116
Query: 281 LHIIL 267
H+I+
Sbjct: 117 YHVIM 121
>AC084161-4|AAK29730.3| 724|Caenorhabditis elegans Hypothetical
protein Y92H12A.2 protein.
Length = 724
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = -3
Query: 716 ENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPA 597
E+E LPDGW+M+ + G T++++ TK + W P A
Sbjct: 267 EDELRLPDGWDMQVA-PNGRTFFIDHRTKTTTWTDPRPGA 305
>AL034392-2|CAA22305.1| 120|Caenorhabditis elegans Hypothetical
protein Y40B1A.2 protein.
Length = 120
Score = 34.7 bits (76), Expect = 0.075
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Frame = -3
Query: 692 GWEMRTSRSTGMTYYLNTYTKKSQWERP-EAPADAG 588
GW + S S+G YY N T+ SQW++P E PA+ G
Sbjct: 10 GWTEQMS-SSGKMYYYNKKTEISQWDKPAEWPAEGG 44
>U58758-4|AAK68614.1| 914|Caenorhabditis elegans Hypothetical
protein ZK1127.9a protein.
Length = 914
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 728 RMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPAD 594
RM + P PD + G YY N+ T+++ WE+P+A D
Sbjct: 221 RMPHGQIPQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKALID 265
>U58758-3|AAK68615.1| 905|Caenorhabditis elegans Hypothetical
protein ZK1127.9b protein.
Length = 905
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 728 RMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPAD 594
RM + P PD + G YY N+ T+++ WE+P+A D
Sbjct: 212 RMPHGQIPQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKALID 256
>Z68750-3|CAA92964.2| 1092|Caenorhabditis elegans Hypothetical
protein K01A6.2 protein.
Length = 1092
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 701 LPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
LP GWE ++ G T+Y++ +K+Q+ERP
Sbjct: 332 LPPGWEQVDDQNYG-TFYVDHINRKTQYERP 361
>Z22176-1|CAA80142.1| 724|Caenorhabditis elegans Hypothetical
protein ZK1098.1 protein.
Length = 724
Score = 31.5 bits (68), Expect = 0.70
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 662 GMTYYLNTYTKKSQWERPE 606
G YY NT TKK+QW +P+
Sbjct: 137 GKPYYYNTLTKKTQWVKPD 155
Score = 29.9 bits (64), Expect = 2.1
Identities = 11/38 (28%), Positives = 20/38 (52%)
Frame = -3
Query: 719 NENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPE 606
+ + P + W + T+ G YY N TK++ W +P+
Sbjct: 74 SHSSPSVESDWSVHTNEK-GTPYYHNRVTKQTSWIKPD 110
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 689 WEMRTSRSTGMTYYLNTYTKKSQWERP 609
W+ S+S + YY+ ++K+QWE P
Sbjct: 3053 WQRAISKSNLLPYYIEQTSEKTQWEHP 3079
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 689 WEMRTSRSTGMTYYLNTYTKKSQWERP 609
W+ S+S + YY+ ++K+QWE P
Sbjct: 3053 WQRAISKSNLLPYYIEQTSEKTQWEHP 3079
>U58758-6|AAO38577.1| 604|Caenorhabditis elegans Hypothetical
protein ZK1127.9e protein.
Length = 604
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 707 PPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPAD 594
P PD + G YY N+ T+++ WE+P+A D
Sbjct: 7 PQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKALID 44
>U58758-5|AAL11107.1| 693|Caenorhabditis elegans Hypothetical
protein ZK1127.9c protein.
Length = 693
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 707 PPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERPEAPAD 594
P PD + G YY N+ T+++ WE+P+A D
Sbjct: 7 PQNPDDAWNEFNAPDGRKYYFNSITQENTWEKPKALID 44
>U42843-5|AAA83597.2| 375|Caenorhabditis elegans Beclin (human
autophagy) homologprotein 1 protein.
Length = 375
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Frame = -3
Query: 584 VRCSHILVKHAESRRPTSWREEKITRTKEEALELIKGYRKQIVA--NDAQFDEIALKYSD 411
+ C H L RRP S EK + T E + G+ + ++ +DAQF A +D
Sbjct: 10 LNCQHPLRLDFTQRRPDSADSEKKSETV--ITEALTGHSRNLMKLISDAQFPSDAPVCND 67
Query: 410 CSSAKR 393
CS A R
Sbjct: 68 CSDALR 73
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 689 WEMRTSRSTGMTYYLNTYTKKSQWERP 609
W+ S+S + YY+ ++K+QWE P
Sbjct: 3053 WQRAISKSNLLPYYIEQTSEKTQWEHP 3079
>Z68105-3|CAA92121.2| 442|Caenorhabditis elegans Hypothetical
protein F13E6.4 protein.
Length = 442
Score = 29.9 bits (64), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -3
Query: 704 PLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
P+P GWEM S G+ Y+ + +K + W+ P
Sbjct: 204 PMPQGWEM-CYDSDGVRYFKDHNSKTTTWDDP 234
>U80437-14|ABO52817.1| 1590|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform b protein.
Length = 1590
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 689 WEMRTSRSTGMTYYLNTYTKKSQWERP 609
W + S + G TYY N TK++QW P
Sbjct: 1352 WAIAKSEA-GETYYYNKITKETQWTAP 1377
>U80437-13|ABO52816.1| 1604|Caenorhabditis elegans Histone
methyltransferase-likeprotein 1, isoform a protein.
Length = 1604
Score = 29.1 bits (62), Expect = 3.7
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -3
Query: 689 WEMRTSRSTGMTYYLNTYTKKSQWERP 609
W + S + G TYY N TK++QW P
Sbjct: 1366 WAIAKSEA-GETYYYNKITKETQWTAP 1391
>Z78016-6|CAB01441.1| 336|Caenorhabditis elegans Hypothetical
protein R186.2a protein.
Length = 336
Score = 28.7 bits (61), Expect = 5.0
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Frame = +2
Query: 98 YLVFCE*TIMTIPVLQHFILF-----VNFLK------SFQQLHKYSIVFYIFLFSLSKYK 244
Y +F T++ VL FI+F +NFLK S + SI+FYI LS+Y+
Sbjct: 24 YPIFLTITLIFHSVLLVFIIFFSPSHLNFLKFLLLTTSLLDVFATSILFYIQPRILSEYQ 83
Query: 245 MNKTKQCGG*C 277
+N C G C
Sbjct: 84 VNVPVYCYGPC 94
>Z81125-3|CAB03384.1| 790|Caenorhabditis elegans Hypothetical
protein T22A3.5 protein.
Length = 790
Score = 28.3 bits (60), Expect = 6.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = -3
Query: 728 RMSNENEPPLPDGWEMRTSRSTGMTYYLNTYTKKSQWERP 609
R+ + PLP+GW + S +GM Y + +T+ +P
Sbjct: 167 RIDLDKSNPLPEGWTV-ISHQSGMPVYYHKFTRVVTHSKP 205
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,157,822
Number of Sequences: 27780
Number of extensions: 351599
Number of successful extensions: 955
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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