Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c24
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                28   0.085
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.2  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    22   7.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   7.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.8  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 28.3 bits (60), Expect = 0.085
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 382 RSPPRLADEQSEYLRAISSNCASFATIC 465
           R PP L++  S Y+ ++ ++ A FAT C
Sbjct: 367 RQPPTLSESYSSYVNSMYASGAQFATPC 394


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -3

Query: 722 SNENEPPLPDGWEMRTSRSTGMTYYLNTY 636
           +N+N   L D W+  T     +  YLNTY
Sbjct: 185 NNKNFVDLSDYWKSGTWDIINVPAYLNTY 213


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 119 TIMTIPVLQHFILFVNFLKSF 181
           T + +P+L  F+LF   L +F
Sbjct: 296 TSLVVPLLGKFVLFTMILDTF 316


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +2

Query: 359 SVLSQTYPGHHHA*QTSSQN 418
           S+L Q  PGHH+    S Q+
Sbjct: 55  SLLRQGVPGHHYGAAGSQQD 74


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 528 PGSWATAFSVFNQYMTAA 581
           P SW  A +V N+Y+ A+
Sbjct: 548 PCSWGRAINVANRYVYAS 565


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,454
Number of Sequences: 438
Number of extensions: 4278
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)