Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c21
         (138 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    25   1.4  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    24   2.4  
SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    23   4.2  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    23   4.2  

>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -2

Query: 125 VVEARSRSFGFYYFYLFINHVRILAGTGFSHHKAEQFCIKK 3
           +V  +SR+F  +YF L  N   +  G G   H    F  KK
Sbjct: 239 LVHFQSRNFHQWYFELVNNFNLLFYGFGSKEHFLSSFVEKK 279


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 108 PFFRFLLFLFIYQSCPHPGRNWL 40
           PF    ++L I +   H GR+W+
Sbjct: 182 PFLYLAIYLIIEKPARHAGRDWV 204


>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 101 FGFYYFYLFINHVRILAGTGFSH 33
           FG ++F+ F+    ILA  G SH
Sbjct: 321 FGKFFFWTFVADFVILAWIGGSH 343


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 108 PFFRFLLFLFIYQSCPHPGRNWLL 37
           PFF F + L   +   + GR+W+L
Sbjct: 183 PFFYFAIKLLTVKPSRNAGRDWVL 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 514,926
Number of Sequences: 5004
Number of extensions: 6167
Number of successful extensions: 21
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)