Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c21
         (138 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal ion/p...    22   2.3  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    22   2.3  
DQ182016-1|ABA56308.1|  353|Anopheles gambiae G(alpha)i protein.       20   9.3  
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    20   9.3  
AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    20   9.3  

>AY170874-1|AAO34131.1| 1221|Anopheles gambiae alkali metal
           ion/proton exchanger 3 protein.
          Length = 1221

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -3

Query: 106 VLSVFIIFIYLSIMSASWQELASLITRLNNFV 11
           + S F++ +  +I+   W  L  L+TR  + V
Sbjct: 441 IASFFVVALGGTIIGVIWGFLTGLVTRFTDHV 472


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 22.2 bits (45), Expect = 2.3
 Identities = 7/14 (50%), Positives = 12/14 (85%)
 Frame = -3

Query: 64  SASWQELASLITRL 23
           SASW+E+A+ + R+
Sbjct: 613 SASWEEIAAAVERM 626


>DQ182016-1|ABA56308.1|  353|Anopheles gambiae G(alpha)i protein.
          Length = 353

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -2

Query: 74  INHVRILAGTGFSHHKAEQF 15
           +  ++I+  TG+S  + EQ+
Sbjct: 49  VKQMKIIHETGYSQEECEQY 68


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -2

Query: 35   HHKAEQFCIK 6
            H KA+Q C+K
Sbjct: 1883 HQKAQQHCVK 1892


>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 64  SASWQELASLITRLN 20
           SASW  +A+ + R+N
Sbjct: 556 SASWLAIANALQRIN 570


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,815
Number of Sequences: 2352
Number of extensions: 1420
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 25
effective length of database: 505,179
effective search space used: 10103580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)