Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c21
(138 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase ... 21 1.0
DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase ... 21 1.0
AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase ... 21 1.3
AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase ... 21 1.3
DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channe... 19 4.1
AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor p... 19 5.4
AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor p... 19 5.4
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 18 9.5
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein. 18 9.5
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 18 9.5
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 18 9.5
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 18 9.5
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 18 9.5
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 18 9.5
>DQ013068-1|AAY81956.1| 931|Apis mellifera dusty protein kinase
isoform B protein.
Length = 931
Score = 21.4 bits (43), Expect = 1.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 104 SFGFYYFYLFINHVRI 57
+FG ++YL HVR+
Sbjct: 778 AFGILFWYLCAGHVRL 793
>DQ013067-1|AAY81955.1| 969|Apis mellifera dusty protein kinase
isoform A protein.
Length = 969
Score = 21.4 bits (43), Expect = 1.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = -2
Query: 104 SFGFYYFYLFINHVRI 57
+FG ++YL HVR+
Sbjct: 816 AFGILFWYLCAGHVRL 831
>AF213012-1|AAG43568.1| 492|Apis mellifera acetylcholinesterase
protein.
Length = 492
Score = 21.0 bits (42), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -1
Query: 93 LLFLFIYQSCPHPGR-NWLLSSQ 28
LLF + SC P R N + SSQ
Sbjct: 7 LLFFLLLSSCTRPSRGNAVPSSQ 29
>AB181702-1|BAE06051.1| 628|Apis mellifera acetylcholinesterase
protein.
Length = 628
Score = 21.0 bits (42), Expect = 1.3
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Frame = -1
Query: 93 LLFLFIYQSCPHPGR-NWLLSSQ 28
LLF + SC P R N + SSQ
Sbjct: 7 LLFFLLLSSCTRPSRGNAVPSSQ 29
>DQ667183-1|ABG75735.1| 463|Apis mellifera GABA-gated ion channel
protein.
Length = 463
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/12 (50%), Positives = 8/12 (66%)
Frame = -1
Query: 60 HPGRNWLLSSQG 25
HP RN+ +S G
Sbjct: 352 HPSRNFTMSEDG 363
>AY263366-1|AAO92605.1| 139|Apis mellifera octopamine receptor
protein.
Length = 139
Score = 19.0 bits (37), Expect = 5.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -1
Query: 108 PFFRFLLFLFIYQSCPHP 55
PFF L ++C HP
Sbjct: 24 PFFTMYLVRAFCRNCIHP 41
>AJ547798-1|CAD67999.1| 587|Apis mellifera octopamine receptor
protein.
Length = 587
Score = 19.0 bits (37), Expect = 5.4
Identities = 7/18 (38%), Positives = 9/18 (50%)
Frame = -1
Query: 108 PFFRFLLFLFIYQSCPHP 55
PFF L ++C HP
Sbjct: 472 PFFTMYLVRAFCRNCIHP 489
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/11 (45%), Positives = 7/11 (63%)
Frame = -2
Query: 98 GFYYFYLFINH 66
G +FY +NH
Sbjct: 227 GLNHFYFMLNH 237
>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
Length = 1946
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/8 (62%), Positives = 7/8 (87%)
Frame = -1
Query: 75 YQSCPHPG 52
+Q+ PHPG
Sbjct: 1745 FQTFPHPG 1752
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/11 (45%), Positives = 7/11 (63%)
Frame = -2
Query: 98 GFYYFYLFINH 66
G +FY +NH
Sbjct: 227 GLNHFYFMLNH 237
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 18.2 bits (35), Expect = 9.5
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = -1
Query: 90 LFLFIYQSCPHPGRNWLL 37
LFL + P G WLL
Sbjct: 120 LFLKSTEVTPRDGLGWLL 137
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 18.2 bits (35), Expect = 9.5
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = +1
Query: 100 KERLLASTTKP 132
KER A+TT+P
Sbjct: 793 KERKTATTTQP 803
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Frame = -1
Query: 78 IYQSCPHPGRNW 43
+ Q+CP P W
Sbjct: 260 VAQACPTPEYRW 271
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 18.2 bits (35), Expect = 9.5
Identities = 5/12 (41%), Positives = 7/12 (58%)
Frame = -1
Query: 78 IYQSCPHPGRNW 43
+ Q+CP P W
Sbjct: 260 VAQACPTPEYRW 271
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,954
Number of Sequences: 438
Number of extensions: 476
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used: 2564145
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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