Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c20
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   2.0  
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   2.6  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.6  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             26   3.4  
SPBC19F8.06c |meu22||amino acid permease, unknown 11|Schizosacch...    26   3.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   6.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   7.9  
SPBC216.06c |swi1||replication fork protection complex subunit S...    25   7.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.9  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
 Frame = -2

Query: 509 SFLNV-RWFKNRTEMLTLSTSVVKISGQLTTLRKITVLGSNKIIPKAFNNSTK 354
           SF  V R F + T+ L L  S   +S  +     +TV G+  II KAF+  T+
Sbjct: 196 SFCEVAREFAHDTKSLLLYESWKLLSSVILDKDSVTVFGNKGIISKAFDIETE 248


>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/50 (26%), Positives = 27/50 (54%)
 Frame = -3

Query: 277 EQPLMLLTNSEIYFRINYNVIPSIVAAEEISQQSNSDSDVETKKKRYRKE 128
           + PL   +N      +N N  P+     E+  +++S+SD + +KK+ +K+
Sbjct: 108 KDPLDESSNGIKNLSLNKNDEPAFQTNGEVKMKNSSESDNQPEKKKIKKQ 157


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 12/46 (26%), Positives = 25/46 (54%)
 Frame = -3

Query: 187 SQQSNSDSDVETKKKRYRKEKIGFRDRKVKILNYYQR*NSTFNHAK 50
           S+ SNS + + +KK+ +    I    ++ K+LN  ++    + +AK
Sbjct: 315 SENSNSQATIPSKKRNFDDPTIDEMVQEEKLLNKQRKYGQNYEYAK 360


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 328 LTTKRGRIPFGSIRC*LEQPLMLLTNSEIYFRINYNVIPSIVAA 197
           L TK    P   ++  LE PL +L       R  + + PS+V+A
Sbjct: 174 LQTKVLVTPISPLQSFLEDPLRILRGIRFASRFEFTIDPSVVSA 217


>SPBC19F8.06c |meu22||amino acid permease, unknown
           11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -2

Query: 470 MLTLSTSVVKISGQLTTLRKITVLGSNKIIPKAFNNSTKR 351
           ++ LST  V  S      R +  L  N   PK FN + KR
Sbjct: 349 VILLSTLSVGNSASYAASRALFALAKNGYAPKIFNKTNKR 388


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -3

Query: 295  SIRC*LEQPLMLLTNSEIYFRINYNVIPSIVAAEEISQQSNSDSD 161
            SIRC  ++    ++ S   FR  Y+VIPS +       Q + DSD
Sbjct: 950  SIRCTADK----ISKSNFDFRRPYSVIPSRMTGRSSFTQLSDDSD 990


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -2

Query: 395 SNKIIPKAFNNSTKRNFNYQNNVDYKTRKN 306
           ++  +  +  NS K+N+N  NN +Y    N
Sbjct: 597 ASSFLNSSSGNSNKQNYNNNNNQNYGNNNN 626


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 265 MLLTNSEIYFRINYNVIPSIVAAEEI 188
           M L +SEIY RI  N++ +I   EEI
Sbjct: 449 MTLCSSEIYQRIADNLLSNIFYQEEI 474


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/46 (26%), Positives = 26/46 (56%)
 Frame = -2

Query: 419 LRKITVLGSNKIIPKAFNNSTKRNFNYQNNVDYKTRKNPFWLYSLL 282
           L +I  L  +K++ + F+N+ ++ +N  N +   +    + +YSLL
Sbjct: 532 LLQIVTLLLSKVLGRIFDNTPRKKWNRWNQLSAPSWGTVYPVYSLL 577


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,069,407
Number of Sequences: 5004
Number of extensions: 39238
Number of successful extensions: 126
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)