Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c20
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0657 + 24786717-24786924,24786925-24786965,24787379-247875...    29   2.0  
06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635     29   2.6  
03_02_0542 - 9348126-9349585,9352433-9352655                           27   8.0  

>02_04_0657 +
           24786717-24786924,24786925-24786965,24787379-24787521,
           24787597-24787774,24788054-24788123,24788197-24788345,
           24788491-24788586,24789213-24789283,24789879-24789940,
           24790175-24790238,24790326-24790410,24790515-24790641,
           24790714-24790775,24790863-24790923,24790987-24791147,
           24791355-24791648
          Length = 623

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 239 IYFRICK*HKRLLQLTANRAKRDSSSFCSQHYFD 340
           +YF + K H R+L +   R     +SF S +YFD
Sbjct: 141 VYFNVSKQHSRILLILLLRFSGQCTSFRSFYYFD 174


>06_02_0331 - 14503063-14503697,14503744-14504019,14504353-14504635
          Length = 397

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 214 PSIVAAEEISQQSNSDSDVETKKKRYRKEKIGFRDRKVKI 95
           PS    EE+     S   + ++ K+ RKE I FRDR  ++
Sbjct: 320 PSQFQEEEVKSPEPSVHKLASQVKKLRKENIEFRDRNAEL 359


>03_02_0542 - 9348126-9349585,9352433-9352655
          Length = 560

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/55 (32%), Positives = 33/55 (60%)
 Frame = -3

Query: 244 IYFRINYNVIPSIVAAEEISQQSNSDSDVETKKKRYRKEKIGFRDRKVKILNYYQ 80
           + F I+YN I ++ A ++ + +SNS + +++ K R  KE+I   +R VK    Y+
Sbjct: 494 VTFSIDYNGIMNVSAEDKTTGRSNSIT-IKSDKGRLSKEEI---ERMVKKAEKYK 544


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,455,023
Number of Sequences: 37544
Number of extensions: 191168
Number of successful extensions: 447
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 447
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)