Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c20
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX928748-1|CAH74051.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL391824-1|CAI17865.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL135797-1|CAI17871.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL135796-1|CAI17854.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL133553-2|CAI17858.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL133515-1|CAI17853.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL121996-1|CAI17844.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AL118512-1|CAI17864.1| 5635|Homo sapiens protein ( Human DNA seq... 30 5.0
AJ306906-1|CAC37630.1| 2673|Homo sapiens fibulin-6 protein. 30 5.0
AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein. 30 5.0
AL591025-3|CAH70179.1| 612|Homo sapiens G protein-coupled recep... 30 6.7
AB037844-1|BAA92661.1| 616|Homo sapiens KIAA1423 protein protein. 30 6.7
>BX928748-1|CAH74051.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone RP11-465I11 on chromosome 1 Contains part of
the gene for hemicentin (FIBL-6). ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL391824-1|CAI17865.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-268N14 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL135797-1|CAI17871.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-77J13 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL135796-1|CAI17854.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-164L12 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL133553-2|CAI17858.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-174L6 on chromosome 1 Contains the3' end
of the gene for hemicentin, the PRG4 gene for
proteoglycan 4 ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL133515-1|CAI17853.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-153O3 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL121996-1|CAI17844.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-118G19 on chromosome 1q25.1-31.1 Contains
the 5' end of the gene for hemicentin. ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AL118512-1|CAI17864.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-248A21 on chromosome 1q31.1-31.3 Contains
part of the gene for hemicentin (FIBL-6). ).
Length = 5635
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3091 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3147
>AJ306906-1|CAC37630.1| 2673|Homo sapiens fibulin-6 protein.
Length = 2673
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 129 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 185
>AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein.
Length = 5636
Score = 30.3 bits (65), Expect = 5.0
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = -2
Query: 497 VRWFKNRTEMLTLSTSV-VKISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNV 327
+ W+KN M+T ST V + GQ+ ++K V + + + +A N + + + N+ NV
Sbjct: 3092 ITWYKN-GRMITESTHVEILADGQMLHIKKAEVSDTGQYVCRAINVAGRDDKNFHLNV 3148
>AL591025-3|CAH70179.1| 612|Homo sapiens G protein-coupled receptor
178 protein.
Length = 612
Score = 29.9 bits (64), Expect = 6.7
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 107 TISKANFLLS-VSFFLCFNITIRIGL 181
T+SK +F+L V FF+CF +TI +G+
Sbjct: 148 TLSKRHFVLVFVVFFICFGLTIFVGI 173
>AB037844-1|BAA92661.1| 616|Homo sapiens KIAA1423 protein protein.
Length = 616
Score = 29.9 bits (64), Expect = 6.7
Identities = 13/26 (50%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +2
Query: 107 TISKANFLLS-VSFFLCFNITIRIGL 181
T+SK +F+L V FF+CF +TI +G+
Sbjct: 152 TLSKRHFVLVFVVFFICFGLTIFVGI 177
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,990,859
Number of Sequences: 237096
Number of extensions: 1185401
Number of successful extensions: 3277
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3277
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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