Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c20
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical pr...    32   0.25 
AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical ...    31   0.58 
L12018-5|AAU87822.1|  557|Caenorhabditis elegans Twik family of ...    29   3.1  
Z83123-9|CAB05605.1|  321|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z83123-3|CAB05604.1|  321|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory recep...    27   7.2  
AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical...    27   7.2  
AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative chem...    27   7.2  

>Z71185-5|CAA94911.1| 1078|Caenorhabditis elegans Hypothetical
           protein C35A5.8 protein.
          Length = 1078

 Score = 32.3 bits (70), Expect = 0.25
 Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
 Frame = -2

Query: 500 NVRWFKNRTEMLTLSTSVVK-ISGQLTTLRKITVLGSNKIIPKAFNNSTKRNFNYQN-NV 327
           N++++ + +++L LS S+ K +S   + +RK+  L   +++    NN T  +F +   N+
Sbjct: 587 NLKFWPSNSDLLDLSLSLFKDLSLGYSAVRKLFRLPEVQLL---LNNHTADHFMFLGPNI 643

Query: 326 DYKTRKNPFWLYSLLT 279
           DY+T K     Y  LT
Sbjct: 644 DYQTMKQRTTFYEALT 659


>AL132951-2|CAC44305.1|  561|Caenorhabditis elegans Hypothetical
           protein Y67H2A.4a protein.
          Length = 561

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 12/39 (30%), Positives = 26/39 (66%)
 Frame = -3

Query: 217 IPSIVAAEEISQQSNSDSDVETKKKRYRKEKIGFRDRKV 101
           +P    A +  + + S+ +VE  K++ +K+K+GFR+R++
Sbjct: 154 LPFRPEASQKEEVTESNGEVEEVKEKPKKKKLGFRERRI 192


>L12018-5|AAU87822.1|  557|Caenorhabditis elegans Twik family of
           potassium channelsprotein 7 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 20/43 (46%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
 Frame = +3

Query: 291 IEPKGILPRFVVNIILIVKVAFSGIIKSFRN--NFITS*YCNF 413
           IE K I P F+V  ILIV  AF G++ S     +F TS Y +F
Sbjct: 364 IEEKRI-PAFLVLAILIVYTAFGGVLMSKLEPWSFFTSFYWSF 405


>Z83123-9|CAB05605.1|  321|Caenorhabditis elegans Hypothetical
           protein T04A11.1 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 195 KKYHNNPILIVMLKQRKKDTERRKLALE 112
           K++  NP  + ++ Q KKD E  K+A E
Sbjct: 16  KRFSGNPAAVCLIPQAKKDDEYLKIAAE 43


>Z83123-3|CAB05604.1|  321|Caenorhabditis elegans Hypothetical
           protein T04A11.4 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 195 KKYHNNPILIVMLKQRKKDTERRKLALE 112
           K++  NP  + ++ Q KKD E  K+A E
Sbjct: 16  KRFSGNPAAVCLIPQAKKDDEYLKIAAE 43


>U00047-6|AAA50692.1|  279|Caenorhabditis elegans Hypothetical
           protein ZK418.8 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/44 (27%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = -2

Query: 452 SVVKISGQ-LTTLRKITVLGSNKIIPKAFNNSTKRNFNYQNNVD 324
           S+V + G+ LT L+++ V+    ++P+ +N +  RN++    +D
Sbjct: 210 SLVTVRGRDLTALKEVEVVMKETVLPRNYNCARNRNYDEDTFLD 253


>U39645-3|AAA80362.3|  439|Caenorhabditis elegans Gustatory receptor
           family protein 2 protein.
          Length = 439

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 491 WFKNRTEMLTLSTSVVKISGQLTTLRKITVLGSNKIIP 378
           +F N   M+TL  +++ +SG L +L+  T LG+ ++ P
Sbjct: 108 FFANPRSMITLCNALIMLSGLLASLQLYT-LGAKRLKP 144


>AL132949-10|CAB61082.1|  721|Caenorhabditis elegans Hypothetical
           protein Y53F4B.12 protein.
          Length = 721

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 LKPIFSFLYLFFFVSTSLSELDC 182
           L PIF+FL + FF +  LSEL C
Sbjct: 64  LAPIFAFL-IIFFSAAHLSELSC 85


>AF387605-1|AAK70488.1|  427|Caenorhabditis elegans putative
           chemoreceptor GUR-2 protein.
          Length = 427

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = -2

Query: 491 WFKNRTEMLTLSTSVVKISGQLTTLRKITVLGSNKIIP 378
           +F N   M+TL  +++ +SG L +L+  T LG+ ++ P
Sbjct: 96  FFANPRSMITLCNALIMLSGLLASLQLYT-LGAKRLKP 132


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,150,347
Number of Sequences: 27780
Number of extensions: 212296
Number of successful extensions: 738
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)