Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c19
(426 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) simi... 239 6e-64
At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B) 239 6e-64
At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A) iden... 239 6e-64
At5g46160.2 68418.m05678 ribosomal protein L14 family protein / ... 53 7e-08
At5g46160.1 68418.m05677 ribosomal protein L14 family protein / ... 53 7e-08
At1g17560.1 68414.m02163 ribosomal protein L14 family protein si... 49 2e-06
At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II) oxygenase-re... 30 0.57
At5g61780.1 68418.m07753 tudor domain-containing protein / nucle... 29 1.7
At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein ... 28 2.3
At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2... 27 5.3
At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family... 27 7.0
At4g23150.1 68417.m03341 protein kinase family protein contains ... 27 7.0
At3g10880.1 68416.m01310 hypothetical protein 27 7.0
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 26 9.3
>At3g04400.1 68416.m00466 60S ribosomal protein L23 (RPL23C) similar
to ribosomal protein L17 GB:AAA34113.1 from [Nicotiana
tabacum]
Length = 140
Score = 239 bits (585), Expect = 6e-64
Identities = 106/132 (80%), Positives = 125/132 (94%)
Frame = -3
Query: 397 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 218
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 217 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 38
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 37 VAKECADLWPRM 2
+ KECADLWPR+
Sbjct: 121 IGKECADLWPRI 132
>At2g33370.1 68415.m04090 60S ribosomal protein L23 (RPL23B)
Length = 140
Score = 239 bits (585), Expect = 6e-64
Identities = 106/132 (80%), Positives = 125/132 (94%)
Frame = -3
Query: 397 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 218
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 217 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 38
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 37 VAKECADLWPRM 2
+ KECADLWPR+
Sbjct: 121 IGKECADLWPRI 132
>At1g04480.1 68414.m00439 60S ribosomal protein L23 (RPL23A)
identical to GB:AAB80655
Length = 140
Score = 239 bits (585), Expect = 6e-64
Identities = 106/132 (80%), Positives = 125/132 (94%)
Frame = -3
Query: 397 MSKRGRGGSAGAKFRISLGLPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDM 218
MSKRGRGG++G KFR+SLGLPV A +NCADNTGAKNLY+I+V+GIKGRLNRLP+A GDM
Sbjct: 1 MSKRGRGGTSGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDM 60
Query: 217 IVATVKKGKPELRKKVMPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKGSAITGP 38
++ATVKKGKP+LRKKV+PAV++RQRKP+RR+DGVF+YFEDNAGVIVN KGEMKGSAITGP
Sbjct: 61 VMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVFMYFEDNAGVIVNPKGEMKGSAITGP 120
Query: 37 VAKECADLWPRM 2
+ KECADLWPR+
Sbjct: 121 IGKECADLWPRI 132
>At5g46160.2 68418.m05678 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 172
Score = 53.2 bits (122), Expect = 7e-08
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = -3
Query: 340 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 170
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 47 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 100
Query: 169 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 26
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 101 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 155
>At5g46160.1 68418.m05677 ribosomal protein L14 family protein /
huellenlos paralog (HLP) contains Pfam profile PF00238:
Ribosomal protein L14p/L23e; identical to cDNA
HUELLENLOS PARALOG (HLP) nuclear gene for mitochondrial
product GU:18140859
Length = 173
Score = 53.2 bits (122), Expect = 7e-08
Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 10/115 (8%)
Frame = -3
Query: 340 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKK---V 170
+ +G V+ DN+GAK V+ +Q +KG+ A GD IVA+VK+ P + K V
Sbjct: 48 IQMGTVLKVVDNSGAKK--VMCIQALKGK----KGARLGDTIVASVKEAMPNGKVKKGAV 101
Query: 169 MPAVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMK-------GSAITGPVAKE 26
+ VV+R R DG + F+DNA V+V++K + G+ + GPV E
Sbjct: 102 VYGVVVRAAMQRGRVDGSEVRFDDNAVVLVDSKDKNTKTDRQPIGTRVFGPVPHE 156
>At1g17560.1 68414.m02163 ribosomal protein L14 family protein
similar to GB:Z98756 from (Mycobacterium leprae)
Length = 196
Score = 48.8 bits (111), Expect = 2e-06
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Frame = -3
Query: 340 LPVGAVINCADNTGAKNLYVIAVQGIKGRLNRLPAAGSGDMIVATVKKGKPELRKKV--- 170
+ +G ++ C DN+ AK V+ +Q ++G+ A GD+IV +VK+ P ++KKV
Sbjct: 49 IQMGTILKCVDNSCAKE--VMCIQSLRGK----KGARLGDIIVGSVKEANPIVQKKVKKD 102
Query: 169 -MP-----------AVVIRQRKPFRRRDGVFIYFEDNAGVIVNNKGEMKG 56
+P VV+R P R DG + F+DNA V+V K E KG
Sbjct: 103 AIPKGKVKKGMVVYGVVVRAAMPKGRADGSQVKFDDNAIVVVGIK-EKKG 151
>At1g48700.1 68414.m05450 oxidoreductase, 2OG-Fe(II)
oxygenase-related contains weak hit to Pfam PF03171:
oxidoreductase, 2OG-Fe(II) oxygenase family
Length = 286
Score = 30.3 bits (65), Expect = 0.57
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 80 DYDTRIVLKVYKYSITPSE-RFPL--PDDHCRHYLFPEFRFTLFDCGHNHVPRTGRRQSV 250
D+ +++L+V + +E F + PD+ ++ FPE T+FD + G +
Sbjct: 91 DFSEKLLLEVENFRKWANETNFTIRRPDNTSKYVFFPEVCGTMFDSHYGFFIENGEDRDA 150
Query: 251 QATFDTLDSDHIQILC 298
F DSD +C
Sbjct: 151 DVGFHVEDSDITLNVC 166
>At5g61780.1 68418.m07753 tudor domain-containing protein / nuclease
family protein contains Pfam domains PF00567: Tudor
domain and PF00565: Staphylococcal nuclease homologue
Length = 985
Score = 28.7 bits (61), Expect = 1.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +2
Query: 164 RHYLFPEFRFTLFDCGHNHVPRTGRRQSVQ 253
R YL PEF+F P GRRQS Q
Sbjct: 204 RVYLLPEFQFVQVFVAGLQAPSMGRRQSTQ 233
>At5g56930.1 68418.m07107 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 675
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/28 (46%), Positives = 15/28 (53%)
Frame = +2
Query: 92 RIVLKVYKYSITPSERFPLPDDHCRHYL 175
RI L V K + P P P +CRHYL
Sbjct: 333 RIALGVKKLKLKPVAPKPKPIKYCRHYL 360
>At2g45570.1 68415.m05667 cytochrome P450 76C2, putative (CYP76C2)
(YLS6) identical to SP|O64637 Cytochrome P450 76C2 (EC
1.14.-.-) {Arabidopsis thaliana}, cDNA YLS6 mRNA for
cytochrome P450 (CYP76C2), partial cds GI:13122289
Length = 512
Score = 27.1 bits (57), Expect = 5.3
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 285 YRFFAPVLSAQLITAPTGRPREIRNFAPAEPPRPLLDIL 401
+ F VLS +I T RPR R P+ P P L I+
Sbjct: 10 FPLFCFVLSFFIIFFTTTRPRSSRKVVPSPPGPPRLPII 48
>At4g24890.1 68417.m03562 calcineurin-like phosphoesterase family
protein contains Pfam profile: PF00149 calcineurin-like
phosphoesterase
Length = 615
Score = 26.6 bits (56), Expect = 7.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +1
Query: 208 WPQSCPQNRPPAVCSGDL*YLGQRSHTD 291
WP S + + P +CS + Y+ SH D
Sbjct: 96 WPTSGGKEKTPYICSSPIKYMYCNSHPD 123
>At4g23150.1 68417.m03341 protein kinase family protein contains
Pfam domain, PF00069: Protein kinase domain
Length = 659
Score = 26.6 bits (56), Expect = 7.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 314 AVDYCSHWETQGDTEFRSRGTTTSSLRH 397
AV S QGDTEF++ ++LRH
Sbjct: 362 AVKRLSKTSEQGDTEFKNEVVVVANLRH 389
>At3g10880.1 68416.m01310 hypothetical protein
Length = 278
Score = 26.6 bits (56), Expect = 7.0
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Frame = +2
Query: 242 QSVQATFDTLDSDHIQILC--PC-VVGAVDYCSHWETQGDTEFRSRGTTTSSLRHFVVS 409
QS+ T++ L+ + + L PC +V ++ S ++ + S GT+ SSL H VVS
Sbjct: 18 QSLGETYNDLNQELLNGLLKLPCSLVTSMGALSTFKPDKSPDLESGGTSYSSLNHQVVS 76
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 26.2 bits (55), Expect = 9.3
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 314 AVDYCSHWETQGDTEFRSRGTTTSSLRH 397
A+ CSH +QG+TEF S + +LRH
Sbjct: 401 AIKRCSHI-SQGNTEFLSELSLIGTLRH 427
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,343,931
Number of Sequences: 28952
Number of extensions: 224277
Number of successful extensions: 735
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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