Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c17
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 276 1e-74
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 276 1e-74
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 276 1e-74
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 85 5e-17
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 46 4e-05
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 46 4e-05
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 42 5e-04
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 33 0.17
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 33 0.17
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 33 0.17
Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical pr... 29 4.8
U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like p... 28 6.3
U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like p... 28 6.3
AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like ... 28 6.3
U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore co... 28 8.3
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 276 bits (677), Expect = 1e-74
Identities = 128/167 (76%), Positives = 143/167 (85%)
Frame = -2
Query: 760 GTIVVFAPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 581
G +V FAP N+ TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 241 GMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA 300
Query: 580 KGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSI 401
K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +
Sbjct: 301 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFL 360
Query: 400 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 361 KSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 407
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 276 bits (677), Expect = 1e-74
Identities = 128/167 (76%), Positives = 143/167 (85%)
Frame = -2
Query: 760 GTIVVFAPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 581
G +V FAP N+ TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 275 GMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA 334
Query: 580 KGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSI 401
K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +
Sbjct: 335 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFL 394
Query: 400 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 395 KSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 276 bits (677), Expect = 1e-74
Identities = 128/167 (76%), Positives = 143/167 (85%)
Frame = -2
Query: 760 GTIVVFAPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 581
G +V FAP N+ TEVKSVEMHHE+L EAVPGDNVGFNVKNVSVK++RRG V DSK +P
Sbjct: 275 GMVVTFAPQNVTTEVKSVEMHHESLPEAVPGDNVGFNVKNVSVKDIRRGSVCSDSKQDPA 334
Query: 580 KGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSI 401
K A F AQVI++NHPGQISNGYTPVLDCHTAHIACKF E+KEKVDRRTGK E PK +
Sbjct: 335 KEARTFHAQVIIMNHPGQISNGYTPVLDCHTAHIACKFNELKEKVDRRTGKKVEDFPKFL 394
Query: 400 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
KSGDA IV L+P+KPLCVESF ++ PLGRFAVRDMRQTVAVGVIK+V
Sbjct: 395 KSGDAGIVELIPTKPLCVESFTDYAPLGRFAVRDMRQTVAVGVIKSV 441
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 85.0 bits (201), Expect = 5e-17
Identities = 51/168 (30%), Positives = 86/168 (51%), Gaps = 1/168 (0%)
Frame = -2
Query: 760 GTIVVFAPANIXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPP 581
G +V P +V + + V GDN+ F +K + EL+ G++ S ++
Sbjct: 367 GDTLVVMPNKQPVQVLQIWADDVETERVVAGDNIKFKLKGIEENELQGGFIIC-SPDSLA 425
Query: 580 KGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSI 401
K F A+V+VL H I++GY+ VL +A + +D++TG+ K +
Sbjct: 426 KTGRVFDAEVLVLEHRSIIASGYSCVLHIQSAVEEVTVKGVIATIDKKTGEKKRA--KFV 483
Query: 400 KSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVG-VIKAV 260
K + I+ L +P +E F+E+P LGRF +RD +T+A+G V+K V
Sbjct: 484 KQDEKCIMRLESPEPFVLEPFKEYPYLGRFTLRDEGKTIAIGKVLKVV 531
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 565 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 386
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 487 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 546
Query: 385 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 547 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 588
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 45.6 bits (103), Expect = 4e-05
Identities = 23/102 (22%), Positives = 45/102 (44%)
Frame = -2
Query: 565 FTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDA 386
F +++ I G L H+ + C F + +++ G+ + P+ I G +
Sbjct: 505 FEVRLVAFEIAMPIIKGAKAELYAHSLCVPCTFTNLLYTINKSNGEILKKGPRFIAKGAS 564
Query: 385 AIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
A+V + + +E+F LGR R T+A G+++ V
Sbjct: 565 AVVEIETEYDIAIETFTSCRALGRVTFRAGGNTIAAGIVEKV 606
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/107 (26%), Positives = 48/107 (44%)
Frame = -2
Query: 718 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 539
+KS+ + G + F +K + K++R+G V D K P F A+++VL+
Sbjct: 420 IKSIHRKRMPVGIVKCGQSASFALKKIPKKDVRKGMVLVDPKVKPVASMV-FEAEILVLH 478
Query: 538 HPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIK 398
HP I Y +L + + ++V RTG +V K I+
Sbjct: 479 HPTTIKPNYQAMLHIGSVRQTATLVSMGKEV-LRTGDRDKVQFKFIR 524
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 730 IXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 551
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 296 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 354
Query: 550 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 374
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 355 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 404
Query: 373 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
L + + +E P RF +R +T+ GV V
Sbjct: 405 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 436
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 730 IXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 551
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 550 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 374
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 373 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 33.5 bits (73), Expect = 0.17
Identities = 35/158 (22%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Frame = -2
Query: 730 IXTEVKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQV 551
+ + + +E + + +A PGD +G ++ + K++RRG V + + K AQ+
Sbjct: 297 VKSVISGLESFRKTVDQAEPGDQLGVLLRGLGPKDVRRGCVL-LPQGHKHKVTDKVKAQL 355
Query: 550 IVLNHPGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKS-IKSGDAAIVN 374
VL TP+ + + H+ + +G S + K + G++A V
Sbjct: 356 YVLKE--SEGGAKTPIANYFSEHVF--------SLTWDSGASVRIIGKDFVMPGESAEVE 405
Query: 373 LVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKAV 260
L + + +E P RF +R +T+ GV V
Sbjct: 406 LSLNSQMFIE------PQQRFTIRKGAKTIGTGVFTDV 437
>Z78064-8|CAO82042.1| 357|Caenorhabditis elegans Hypothetical
protein F57B1.9a protein.
Length = 357
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 144 MKYRSCMKNCAVNSSSYFLPLVAFSAALVTLPPPASLKLTALMTPTATVCLM 299
M Y +C ++N Y L ++A+V LPPP ++ + ++ A C++
Sbjct: 188 MMYNNCRYRYSLNVLHY--ELYCQTSAVVNLPPPKAISIMEIVIQFAIPCII 237
>Z19158-2|CAA79571.3| 262|Caenorhabditis elegans Hypothetical
protein T23G5.3 protein.
Length = 262
Score = 29.1 bits (62), Expect = 3.6
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 198 LPLVAFSAALVTLPPPASLKLTALMTPTATVCLMSRTAKRPRGGNSWKDST 350
+P+V + L PPP L +LM P TV + R K P G NS K T
Sbjct: 129 VPIVPRNLLLSKPPPPPPPPLPSLMQPKDTVQIPMR--KPPTGRNSKKIKT 177
>Z78200-2|CAB01578.1| 588|Caenorhabditis elegans Hypothetical
protein T04H1.2 protein.
Length = 588
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -2
Query: 718 VKSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLN 539
V S+ +A+ PG+ ++ LRRG V + + PP +FTA +++L
Sbjct: 450 VGSIRRSRQAVGCVNPGEAASISLNLPDGVSLRRGMVLAEIDHQPPV-CYEFTANLLLLC 508
Query: 538 H 536
H
Sbjct: 509 H 509
>U41007-15|AAQ01538.1| 564|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform b protein.
Length = 564
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 502 LDCHTAHIACKFAEIKEKVDRRTGKSTE 419
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U41007-14|AAA82277.1| 690|Caenorhabditis elegans Kinesin-like
protein protein 10,isoform a protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 502 LDCHTAHIACKFAEIKEKVDRRTGKSTE 419
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>AB023577-1|BAB82459.1| 690|Caenorhabditis elegans Kinesin like
protein protein.
Length = 690
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 502 LDCHTAHIACKFAEIKEKVDRRTGKSTE 419
L C + C+ + +K+K + T KSTE
Sbjct: 457 LQCQNEKLCCELSSLKDKHEEATSKSTE 484
>U97191-1|AAB52432.1| 805|Caenorhabditis elegans Nuclear pore
complex protein protein11 protein.
Length = 805
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +3
Query: 552 T*AVKSAAPLGGLFLESPAT*PRRNSLTDTFFTLKPTLSPGTAS 683
T A +AAP GGLF + T P T F T +P TA+
Sbjct: 468 TTAPAAAAPTGGLFGAATTTAPATVGPTGGLFGAATTTTPATAA 511
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,467,107
Number of Sequences: 27780
Number of extensions: 376325
Number of successful extensions: 1114
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1069
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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