Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c16
(676 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown prot... 32 0.62
AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-P... 32 0.62
AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-P... 32 0.62
BT029073-1|ABJ17006.1| 239|Drosophila melanogaster IP08630p pro... 30 3.3
AY752551-1|AAW32084.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752550-1|AAW32083.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752549-1|AAW32082.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752547-1|AAW32081.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752546-1|AAW32080.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752545-1|AAW32079.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752544-1|AAW32078.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AY752543-1|AAW32077.1| 140|Drosophila melanogaster CG6997 protein. 30 3.3
AE014298-1266|AAF46440.1| 239|Drosophila melanogaster CG32708-P... 30 3.3
>AF132183-1|AAD34771.1| 834|Drosophila melanogaster unknown
protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.62
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 314 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 430
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AE014297-2518|AAF55551.2| 834|Drosophila melanogaster CG18617-PB,
isoform B protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.62
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 314 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 430
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>AE014297-2517|AAF55552.2| 834|Drosophila melanogaster CG18617-PA,
isoform A protein.
Length = 834
Score = 32.3 bits (70), Expect = 0.62
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 314 NPRIFQCIYFNVLFFERFSSFMHSNVFVAAVHFMILCKR 430
NP ++ CI F LF F H + V +M+LC+R
Sbjct: 390 NPALYTCITFPFLFAVMFGDLGHGLILVLFGAWMVLCER 428
>BT029073-1|ABJ17006.1| 239|Drosophila melanogaster IP08630p
protein.
Length = 239
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752551-1|AAW32084.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752550-1|AAW32083.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752549-1|AAW32082.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752547-1|AAW32081.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752546-1|AAW32080.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752545-1|AAW32079.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752544-1|AAW32078.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AY752543-1|AAW32077.1| 140|Drosophila melanogaster CG6997 protein.
Length = 140
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
>AE014298-1266|AAF46440.1| 239|Drosophila melanogaster CG32708-PA
protein.
Length = 239
Score = 29.9 bits (64), Expect = 3.3
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -2
Query: 165 TRLIVVNGESSLSGRLIRNPKKFLSAKVVSTPRKRLKQH 49
TRL + GE GR+ P+K SAK RKR H
Sbjct: 88 TRLREILGEYGAIGRVYLQPEKLSSAKAKKNKRKRYNIH 126
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,705,136
Number of Sequences: 53049
Number of extensions: 385358
Number of successful extensions: 1148
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1146
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2930645700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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