Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c15
         (333 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    27   0.19 
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    26   0.33 
DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.       21   9.3  
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    21   9.3  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 85  SIWIEFLRF*C*NRSIERANRPKAGTILPA 174
           SIW E L+F C  + + R +RP    ++ A
Sbjct: 776 SIWAESLKFECRKQWLRRCHRPLVNRVISA 805


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 26.2 bits (55), Expect = 0.33
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 214 TNTKVDSVQTQLNGLEESFQPLDGLPAQLT 125
           TN+KV  +QT++NGL +    L    ++LT
Sbjct: 891 TNSKVKVLQTKINGLGKQIDKLSANISKLT 920



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 223 IAETNTKVDSVQTQLNGLEESFQPLDGLPAQLT 125
           I +   +   +QTQ+N L+E    L+    +LT
Sbjct: 772 IEQMQIRAQEIQTQINYLQEQQGELEATIQRLT 804


>DQ974171-1|ABJ52811.1|  403|Anopheles gambiae serpin 14 protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 197 QCSNSVKRAGRIVPAF 150
           Q   S+KRAG +VP F
Sbjct: 280 QAHFSMKRAGIVVPVF 295


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)
 Frame = -3

Query: 229 DAIAETNTKVDSVQTQLNGLEESFQPLDGLPAQLTDFNTKISEIQSIL 86
           +A+      +D ++T   GLEE  +    L   +     +I E+QS L
Sbjct: 440 EALKRQEKLIDHIKTSRLGLEEQKRIKAELSQDVGTSKERIHELQSEL 487


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 274,310
Number of Sequences: 2352
Number of extensions: 4084
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 56
effective length of database: 432,267
effective search space used: 23342418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)