Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c14
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1041 - 23876849-23876959,23877853-23878046,23878621-238786...    31   1.2  
11_06_0337 - 22454281-22456399,22458520-22459388                       30   2.2  
12_01_1017 - 10348198-10348326,10348412-10348532,10348746-103492...    29   2.8  
11_06_0230 + 21528384-21528908,21529017-21529150,21530109-215301...    29   3.8  
03_01_0612 - 4501595-4501619,4501752-4501906,4502051-4502092,450...    28   6.6  
03_01_0245 + 1916718-1917443,1917534-1917719                           28   6.6  
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020...    28   8.7  
08_02_1480 + 27401923-27402158,27402847-27402982,27403119-274031...    28   8.7  

>08_02_1041 -
           23876849-23876959,23877853-23878046,23878621-23878691,
           23878956-23879009,23879051-23879187
          Length = 188

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = -1

Query: 722 SVTRKNNDLRDRIKSKVDEQFDQLEREYSDKI--DGFHDNI 606
           ++T K  +  D+I +KV+  F ++E+E+ D    DG + NI
Sbjct: 148 AITEKIENFSDKIDAKVEPIFTEIEKEFEDSTSNDGVNANI 188


>11_06_0337 - 22454281-22456399,22458520-22459388
          Length = 995

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = -1

Query: 686 IKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDE 588
           +KS V++    L +EY+  I G HD+IQY  DE
Sbjct: 12  VKSLVNKLGSLLAQEYT-LISGVHDDIQYINDE 43


>12_01_1017 -
           10348198-10348326,10348412-10348532,10348746-10349275,
           10349318-10349433,10349672-10349990,10350019-10350106,
           10350194-10350639
          Length = 582

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 14/57 (24%), Positives = 26/57 (45%)
 Frame = -1

Query: 263 KQFEEFVQKLILPSSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKI 93
           K+  + +  + +  S+ND +K L        K + Y  +E   E+ W K+   NW +
Sbjct: 515 KEKIQILDSMRMDKSYNDKDKDLNNTIKGIEKFVQYARIEDGAENKWKKTKIINWPL 571


>11_06_0230 +
           21528384-21528908,21529017-21529150,21530109-21530158,
           21530194-21530726
          Length = 413

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = -1

Query: 284 DSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKNKN-MIYKALEFTTESSWVKSNK 108
           DS+ F      E VQ      SF+      YY+  S  K  M+Y  L    E  W++ + 
Sbjct: 346 DSIGFGPTDENEVVQNTRKILSFS------YYDMPSHLKTCMLY--LSIYPEDHWIEKDS 397

Query: 107 FNWKIFCNGFIYDKK 63
             WK    GFI++++
Sbjct: 398 LIWKWIAEGFIHEEQ 412


>03_01_0612 -
           4501595-4501619,4501752-4501906,4502051-4502092,
           4502238-4502279,4502365-4502464,4502825-4502889,
           4503140-4503217
          Length = 168

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = -1

Query: 689 RIKSKVDEQFDQLEREYSDKIDGFHDNIQYFKDEHYSVSCQNGSVLKSKFAKILKSHDYT 510
           R+K ++ E   +L +   +++     N++  ++   S+    GSVLK+K  KIL   D  
Sbjct: 35  RLKEELAETSLRLRQMRGEELHRL--NVEQLQELEKSLESGLGSVLKTKSKKILDEIDGL 92

Query: 509 DKKSIETYEK 480
           ++K ++  E+
Sbjct: 93  ERKRMQLIEE 102


>03_01_0245 + 1916718-1917443,1917534-1917719
          Length = 303

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +2

Query: 302 RTRKVPCR*FREQTAQ*LC-YQSGCTQKIALGCCRSQIPASTRIP--PRSSR-CVCRPIG 469
           RT K PC      TA+ LC  +S   ++  +GC +S  PA+ R P  P + R C  R  G
Sbjct: 95  RTPKTPCT----PTARRLCGVRSRTPRRGQVGCFQSSAPAAARTPRTPTTQRACYVRGTG 150


>11_06_0228 +
           21497248-21498143,21499831-21501700,21501934-21502038,
           21502139-21502232,21502335-21502363
          Length = 997

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
 Frame = -1

Query: 350 IVPFAHEINDTGLYEYDVLAYVDSVEFDGKQFEEFVQKLILPSSFNDSEKVLYYNEASKN 171
           I+  A  + D    E+ V+   DS+ F      E VQ +    SF+      YY+  S  
Sbjct: 399 IITIASLLVDKPAREWSVI--YDSISFGTGDQNEAVQNMRKILSFS------YYHLPSYL 450

Query: 170 KN-MIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALY 48
           K  M+Y  L    E   +  +   WK    GF+++++ K L+
Sbjct: 451 KTCMLY--LSIYPEDHLIYKDILIWKWIAEGFVHEEQDKGLF 490


>08_02_1480 +
           27401923-27402158,27402847-27402982,27403119-27403168,
           27403810-27403813,27404394-27404494,27405084-27406305
          Length = 582

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 324 VNFVSKRHNNFVTNRVVLKR*-HLVAAVLKSRLQHAYRHV 440
           V F+ K  +NF  + V ++R   +V+ ++K +  H YRH+
Sbjct: 422 VGFMRKARHNFRLDEVGIRRQLKIVSQIIKRKDSHLYRHL 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,717,819
Number of Sequences: 37544
Number of extensions: 328258
Number of successful extensions: 867
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)