Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c14
         (725 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.       25   3.2  
AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.           24   4.2  
AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein p...    23   9.6  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   9.6  

>EF592176-1|ABQ95972.2|  661|Anopheles gambiae laccase-3 protein.
          Length = 661

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 452 HNDCYVAVCVLKPGFENG 399
           H DCY   C+   G E G
Sbjct: 86  HTDCYHPACITADGVERG 103


>AY578810-1|AAT07315.1|  897|Anopheles gambiae smurf protein.
          Length = 897

 Score = 24.2 bits (50), Expect = 4.2
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -1

Query: 605 QYFKDEHYSVSCQNGSVLKSK 543
           QY +D+HYS+     S LK +
Sbjct: 556 QYSRDDHYSLQINPDSYLKQR 576


>AB090823-1|BAC57921.1|  429|Anopheles gambiae gag-like protein
           protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 377 QKIALGCCRSQIPASTRIPPRSSRC 451
           QK+ + CC S I  +  I  +  RC
Sbjct: 340 QKLTVSCCISNIKEAPAINLQQQRC 364


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
 Frame = +2

Query: 380 KIALGCCRSQIPASTRIPPRSSRCV-CRPIG 469
           KI LG C S++ A+   P    RC  C  +G
Sbjct: 639 KIKLGFCVSKVRAAPPTPRERVRCYRCLELG 669


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 705,368
Number of Sequences: 2352
Number of extensions: 14847
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74012934
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)