Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c14
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    31   0.008
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    31   0.008
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   3.9  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   3.9  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   5.1  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   9.0  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.0  

>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -1

Query: 224 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYV 45
           +S+ +  +   Y E SK ++      E + E+  + SN +N+K + N +     SK LY 
Sbjct: 270 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY----NSKKLYY 325

Query: 44  KLHNV 30
            + N+
Sbjct: 326 NIINI 330


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 31.5 bits (68), Expect = 0.008
 Identities = 17/65 (26%), Positives = 32/65 (49%)
 Frame = -1

Query: 224 SSFNDSEKVLYYNEASKNKNMIYKALEFTTESSWVKSNKFNWKIFCNGFIYDKKSKALYV 45
           +S+ +  +   Y E SK ++      E + E+  + SN +N+K + N +     SK LY 
Sbjct: 281 NSYKNEREYRKYRETSKGRSRDRTERERSKETKIISSNNYNYKNYNNNY----NSKKLYY 336

Query: 44  KLHNV 30
            + N+
Sbjct: 337 NIINI 341


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 408 KSRLQHAYRHVAVVVFVDQLGQTVFFVSFNRLFI 509
           + R +   RH+  V ++D++ + VF  SF  L I
Sbjct: 452 RKRGEKIARHINSVSYIDKVARIVFPASFGLLNI 485


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 199 TFSESLNDDGNINFCTNSSNCLPSNSTLS 285
           T +  ++D G  N C+NS +   S S++S
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +1

Query: 199 TFSESLNDDGNINFCTNSSNCLPSNSTLS 285
           T +  ++D G  N C+NS +   S S++S
Sbjct: 7   TENAKVSDSGYSNTCSNSQSQRSSGSSIS 35


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
 Frame = -1

Query: 227 PSSFNDSEK-VLYYNEASKNKNMIYKA-LEFTTESSWVKSNKFNWKIFCNGFIYDKKSKA 54
           PSS  D+   V Y+ + ++N    +    E    +  + +      +FCN    D+ +  
Sbjct: 300 PSSVIDTNTGVDYFTQINRNGIACWDTNTELNPNTFILVAENNTTMVFCNDLSIDRSTNT 359

Query: 53  LYVKLHN 33
           +YV   N
Sbjct: 360 MYVLSDN 366


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 7/27 (25%), Positives = 18/27 (66%)
 Frame = -1

Query: 704 NDLRDRIKSKVDEQFDQLEREYSDKID 624
           ND R R+++ ++   ++ +REY  +++
Sbjct: 404 NDARRRVEAALEAVEEERQREYGIRVE 430


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 296 LAYVDSVEFDGKQFEE 249
           L YVD+ +F   Q+EE
Sbjct: 278 LYYVDTEQFSNPQYEE 293


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 320 TGLYEYDVLAYVDSVEFDGKQFEEFVQKLILPSSFN 213
           +G Y Y     +D   ++GK F   ++   +PSS N
Sbjct: 57  SGEYNYKNNVPIDVDRWNGKTFVTILRNDGVPSSLN 92


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,840
Number of Sequences: 438
Number of extensions: 3812
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)