Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c12
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr ...    36   0.009
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    27   4.0  
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy...    27   4.0  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    26   5.2  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    26   6.9  

>SPAC1705.02 |||human 4F5S homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 63

 Score = 35.5 bits (78), Expect = 0.009
 Identities = 17/31 (54%), Positives = 22/31 (70%)
 Frame = -3

Query: 564 MTRGNQRDLARAKNQKKQVEMQKKKNASEKT 472
           M+RGNQRD+ RA+N KK  +  KKK A + T
Sbjct: 1   MSRGNQRDVDRARNLKKS-QASKKKQAGDPT 30


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 766 RCVAFVLYTLIIAKSFFSNF 707
           RC+  + YT  IAK  FSNF
Sbjct: 621 RCILLIPYTRKIAKLLFSNF 640


>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 534 RAKNQKKQVEMQKKKNASEKTGLSLQ 457
           +AKN+KK+ + QKKK  + K  L  Q
Sbjct: 95  KAKNKKKKKKQQKKKKVTGKRDLDNQ 120


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 745 YTLIIAKSFFSNFTPIGEMEGGALS*VSTGLAYRPAFT 632
           Y L+ +  FFS F  IG+M   +L+ + T  A+ P  +
Sbjct: 222 YGLVASIIFFSGFQHIGKMREVSLAKLPTTKAFEPTLS 259


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 170 LNYML*KRS*VETENDLNIKKWCEDCHNHICI--SIYANL 57
           +NY    +   + EN++ I+++ E CH   C    IY N+
Sbjct: 172 INYSEPLKESQKKENEVRIQEFVESCHGQYCTFQQIYNNI 211


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,799,957
Number of Sequences: 5004
Number of extensions: 52146
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)