Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c11
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 111 3e-26
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 111 3e-26
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 111 3e-26
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 111 3e-26
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 111 3e-26
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 72 3e-14
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 46 2e-06
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 41 9e-05
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 33 0.025
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 28 0.53
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|... 27 0.92
SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1 |Sc... 27 1.6
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 26 2.8
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 25 3.7
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 4.9
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 25 4.9
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 25 6.5
SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces po... 25 6.5
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 8.6
SPCC1442.07c |||ubiquitin/metalloprotease fusion protein|Schizos... 24 8.6
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 24 8.6
SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces pombe... 24 8.6
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 61 IQKESTLH 68
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 77 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 136
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 137 IQKESTLH 144
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 153 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 212
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 213 IQKESTLH 220
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 288
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 289 IQKESTLH 296
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 305 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 364
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 365 IQKESTLH 372
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 111 bits (268), Expect = 3e-26
Identities = 50/68 (73%), Positives = 60/68 (88%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
MQIF+KTLTGKTIT E E ++T+ ++K KI DKEG+P DQQRLIFAGKQLED +T++DYN
Sbjct: 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYN 60
Query: 52 IQKESTLH 29
IQKESTLH
Sbjct: 61 IQKESTLH 68
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 72.1 bits (169), Expect = 3e-14
Identities = 31/68 (45%), Positives = 47/68 (69%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
M I +KTLTGK I + +P + V+ +K+++ +KEG+P QQRLI+AGKQ+ D K Y+
Sbjct: 1 MLIKVKTLTGKEIELDIDPNDKVSRIKERVEEKEGIPPSQQRLIYAGKQMADDKNAESYH 60
Query: 52 IQKESTLH 29
++ S LH
Sbjct: 61 LEGGSVLH 68
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 46.4 bits (105), Expect = 2e-06
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAET-VADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADY 56
M + K L + A+T +++LK+KI ++ V++Q+LI++G+ L D KT+ +Y
Sbjct: 1 MNLTFKNLQQQKFVISDVSADTKISELKEKIQTQQNYEVERQKLIYSGRILADDKTVGEY 60
Query: 55 NIQKE 41
NI+++
Sbjct: 61 NIKEQ 65
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 40.7 bits (91), Expect = 9e-05
Identities = 19/68 (27%), Positives = 36/68 (52%)
Frame = -1
Query: 232 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
+ + IK + + +V LK+ IA + ++QRLI+AG+ L+D +++ Y
Sbjct: 4 ISLTIKAANDQKYAVTVDSESSVLALKEAIAPVADIEKERQRLIYAGRVLKDEESLKTYK 63
Query: 52 IQKESTLH 29
IQ ++H
Sbjct: 64 IQDGHSIH 71
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 32.7 bits (71), Expect = 0.025
Identities = 18/57 (31%), Positives = 31/57 (54%)
Frame = +3
Query: 231 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 401
+F LLLI D+G + L +++ A DT+T +Y + +DF R +L G+ +
Sbjct: 8 LFKLLLIGDSGVGKSCL------LLRFADDTYTESYISTIGVDFKIRTFELEGKTVK 58
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 28.3 bits (60), Expect = 0.53
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = -1
Query: 229 QIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMAD 59
+I + T+ K + +TV +LK+ IA P D+ +LI AG+ L + + +
Sbjct: 5 RIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEE 61
>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 200
Score = 27.5 bits (58), Expect = 0.92
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 231 IFTLLLINDNGCCECALASTDGGIVQQAADTHTTNYFPSTAIDFHARNQKLSGRRAR 401
+ LLLI D+G + L +++ + D+ T ++ + IDF R +L G+R +
Sbjct: 9 LIKLLLIGDSGVGKSCL------LLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIK 59
>SPBC29A10.04 |psm1|smc1|mitotic cohesin complex subunit Psm1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1233
Score = 26.6 bits (56), Expect = 1.6
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = -1
Query: 304 TIPPSVEARAHSQQPLSFISNSVKMQIFIKTLTGKTITAETEPAETVADLKQKIADKEGV 125
T+ +++ + S+ L+ I ++ +I K+L + +TE A+ +A + +KI E
Sbjct: 403 TLNRNIKVTSQSKDSLTSIVGDLESKI--KSLHESVSSLDTERADLLAKINEKIESLELE 460
Query: 124 PVDQQR 107
DQQ+
Sbjct: 461 KHDQQK 466
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/42 (35%), Positives = 18/42 (42%)
Frame = +2
Query: 95 RKDKSLLIYGHTFFIGNFLLEIGHRLCGFRFGGNGFARQCFD 220
RK+ +YGH F F + LCG F N QC D
Sbjct: 396 RKESVHEVYGHKFLQHQFYQIMRCALCG-EFLKNAAGMQCID 436
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -3
Query: 236 KNANIHQNIDGQNHYRRNGTRRDGGRSQAKN 144
K+ N Q+I G+++ R+N GRS N
Sbjct: 1518 KDKNKRQDISGESNSRQNNAISRAGRSNGSN 1548
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +2
Query: 65 HSFGIFQLFARKDKSLLIYGH 127
H FGIF + D S+ YGH
Sbjct: 260 HVFGIFVQYPAADGSIFDYGH 280
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -1
Query: 172 ETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYN 53
E ++D +IAD D++++I+A + + + +AD+N
Sbjct: 534 ELLSDHNFEIADLRDELQDKEQIIYALRYAQKQRDIADFN 573
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 6.5
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -1
Query: 181 EPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS-KTMADYNIQKES 38
EPA + L ++ +D+E D++ F G L+ S KT+ D+ ++E+
Sbjct: 26 EPASSRRRLAEENSDEENEEFDEEGGRFFGSGLKKSEKTVLDFLDEQEA 74
>SPCC162.12 ||SPCC1753.06c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 451
Score = 24.6 bits (51), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = -1
Query: 304 TIPPSVEARAHSQQPLSFISNS 239
T+ PS RAHSQ P S + N+
Sbjct: 59 TMRPSALTRAHSQNPNSSLVNN 80
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 24.2 bits (50), Expect = 8.6
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 282 ASTDGGIVQQAADTHTTNYFPSTAIDFH 365
A+ DG Q ++H NY+ +D+H
Sbjct: 2238 AAEDGKETLQIFESHPDNYYQVCFVDYH 2265
>SPCC1442.07c |||ubiquitin/metalloprotease fusion
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 282
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/44 (27%), Positives = 20/44 (45%)
Frame = -1
Query: 205 GKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDS 74
G I +TV D K+K+ + V +L++ G +DS
Sbjct: 9 GNVIALSFNENDTVLDAKEKLGQEIDVSPSLIKLLYKGNLSDDS 52
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 24.2 bits (50), Expect = 8.6
Identities = 15/57 (26%), Positives = 30/57 (52%)
Frame = -1
Query: 175 AETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHHGVTITRR 5
A T+A+ K+ I Q ++ +ED+ ++ ++++ +HHGVTI+ R
Sbjct: 317 ATTLAEYKKYIEKDAAFERRFQIILVKEPSIEDTISILR-GLKEKYEVHHGVTISDR 372
>SPAC25B8.08 |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 590
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +2
Query: 62 GHSFGIFQLFARKDKSLLIYGHTFFIGNFLLE 157
G +FG+ ++F D + G +GN +LE
Sbjct: 79 GSAFGLDKIFQSSDSGNIAEGLELDLGNIMLE 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,880
Number of Sequences: 5004
Number of extensions: 41227
Number of successful extensions: 127
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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