Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c10
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.12 |did2||vacuolar sorting protein Did2|Schizosaccharom...    99   7e-22
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4...    42   1e-04
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    29   0.80 
SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyc...    29   1.1  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    28   1.4  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    27   2.4  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    27   4.3  
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    26   5.6  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   9.8  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    25   9.8  
SPAC227.07c |pab1||protein phosphatase regulatory subunit Pab1|S...    25   9.8  
SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces po...    25   9.8  

>SPBC13G1.12 |did2||vacuolar sorting protein
           Did2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 178

 Score = 99.1 bits (236), Expect = 7e-22
 Identities = 52/104 (50%), Positives = 66/104 (63%), Gaps = 2/104 (1%)
 Frame = -1

Query: 795 KAMDAAXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
           + MD A K+MNLE IS +MDKFE+QF+D++VQ+ YM  AM   T    PQ DVD L+Q V
Sbjct: 75  RGMDRAMKTMNLEMISQVMDKFEAQFDDVNVQTGYMNKAMGSVTAVDTPQEDVDLLMQTV 134

Query: 615 ADEAGLELNMELPS--GVPSTSIGTATVVSQEQDELTQRLARLR 490
           ADEAGLE N  + +   VP+ S+ T      E D L +RL  LR
Sbjct: 135 ADEAGLEFNQNMNNNLSVPAASVPT-PAAPVEDDNLQERLRALR 177


>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
           Did4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 210

 Score = 41.9 bits (94), Expect = 1e-04
 Identities = 27/94 (28%), Positives = 47/94 (50%)
 Frame = -1

Query: 774 KSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLE 595
           KSMN+  ++ +  +FE + E ++ +   ++  M         + + D L+ +V DE G++
Sbjct: 118 KSMNIPAMARITQQFERENEIMEQRQEMIDENMDDALEED-DEEEADELVNKVLDEIGVD 176

Query: 594 LNMELPSGVPSTSIGTATVVSQEQDELTQRLARL 493
           L+  LP    +T IGT   +  E D L  RL  L
Sbjct: 177 LSQGLPDA--ATQIGTVPELKTE-DNLQARLDEL 207


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 16/63 (25%), Positives = 32/63 (50%)
 Frame = -1

Query: 774 KSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLE 595
           ++  + ++S  +DK E  F++ D Q++   NA+S        Q +V  L +Q   E  + 
Sbjct: 597 EAKRMVQLSMDVDKIEEDFKENDEQATSSLNALSSNHEPPQEQANVAELNEQEQIELAMR 656

Query: 594 LNM 586
           L++
Sbjct: 657 LSL 659


>SPAC688.02c |mis14||kinetochore protein Mis14 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 210

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -1

Query: 711 LDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNM 586
           + +Q   +EN   QT+TT   + D+D   Q +A  A L+ N+
Sbjct: 158 VSLQDKEVENPDEQTSTTVFRKEDIDRYEQTIAKVAYLKKNL 199


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -2

Query: 452 SYCNTCKCSNLKGMVVGNQIINKCSHIL*NMVFLIIIFHGYL 327
           SYC   K S  KG+ + N    + + +L      II FH Y+
Sbjct: 337 SYCPELKKSKHKGIALANSFSFRIAKVLKKSRIFIITFHHYV 378


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 765  NLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVP 649
            ++  +STL DK+ +   DLD  S Y E      T T +P
Sbjct: 1291 SISSVSTLGDKYWNLKIDLDNNSDYRELLRESQTLTLMP 1329


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 404 QQPYL*GLNIYMYYNSSDPIKLIHIYS 484
           Q P L G +++ YY S D I   H+++
Sbjct: 804 QIPCLMGYSLFQYYRSGDSISFKHLFT 830


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 13/47 (27%), Positives = 21/47 (44%)
 Frame = +2

Query: 437 MYYNSSDPIKLIHIYSACLNLASLCVSSSCSWETTVAVPIDVLGTPD 577
           +Y  S D ++   I  AC  L    V S C W+ +  + + +   PD
Sbjct: 279 LYRFSDDTVRFEMIQDACRILIDNQVGSFCKWQFSQFMELPISLNPD 325


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +1

Query: 478 LFCLSQPGKSLCEFVL 525
           +FC S P KS+ EFVL
Sbjct: 355 VFCASSPDKSVVEFVL 370


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1033

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 19/86 (22%), Positives = 39/86 (45%), Gaps = 5/86 (5%)
 Frame = -1

Query: 762  LEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVP-----QGDVDNLLQQVADEAGL 598
            L K+S  + K   + E  D++     N  ++++ + +P     Q  ++  LQ+ ADEA L
Sbjct: 898  LVKLSKKIMKCIDEIETKDIEEELGSNKKTESSNSKLPEFTPLQQSLEEELQEGADEAML 957

Query: 597  ELNMELPSGVPSTSIGTATVVSQEQD 520
             L  +    + +  +    +   E+D
Sbjct: 958  ALREKQRELINAIDLEKYAIRGNEED 983


>SPAC227.07c |pab1||protein phosphatase regulatory subunit
           Pab1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 324 N*ISVKNDN*KYHISENMRTFVYNLITNNHTFKV 425
           N ISV +D   Y  ++++R  ++NL  ++H+F +
Sbjct: 180 NSISVNSDAETYISADDLRINLWNLSISDHSFNI 213


>SPBC2G2.13c |||deoxycytidylate deaminase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 395 IINKCSHIL*NMVFLIIIFH 336
           +I +C H++ N  F++II H
Sbjct: 109 VILQCQHVVANFKFIVIILH 128


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,139,509
Number of Sequences: 5004
Number of extensions: 65126
Number of successful extensions: 156
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)