Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c10
         (822 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0904 + 25832026-25832643                                         83   3e-16
11_08_0073 - 28155156-28155296,28155422-28155682,28155858-281559...    54   1e-07
07_01_0908 + 7653813-7653849,7655220-7655350,7655946-7656020,765...    44   2e-04
10_07_0131 + 13258506-13258628,13258737-13258889                       29   4.5  
07_03_1627 + 28229292-28229615,28229735-28229812,28231105-282311...    29   5.9  
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512...    28   7.8  
02_04_0562 - 23886272-23886357,23886456-23886571,23887045-238871...    28   7.8  

>06_03_0904 + 25832026-25832643
          Length = 205

 Score = 82.6 bits (195), Expect = 3e-16
 Identities = 39/103 (37%), Positives = 72/103 (69%), Gaps = 1/103 (0%)
 Frame = -1

Query: 795 KAMDAAXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
           K++D+A  + NL+K+S  MD FE QF +++VQ+ +ME AM+ +T+ + P+ +V++L+QQV
Sbjct: 100 KSLDSALATGNLQKMSETMDNFERQFVNMEVQAEFMEGAMAGSTSLSTPETEVNSLMQQV 159

Query: 615 ADEAGLELNMELP-SGVPSTSIGTATVVSQEQDELTQRLARLR 490
           AD+ GLE+++ LP +   +         + ++D+L++RLA L+
Sbjct: 160 ADDYGLEVSVGLPQAAAHAIPAAKEKEKAVDEDDLSRRLAELK 202


>11_08_0073 -
           28155156-28155296,28155422-28155682,28155858-28155962,
           28156563-28156693,28156905-28156941
          Length = 224

 Score = 54.4 bits (125), Expect = 1e-07
 Identities = 28/81 (34%), Positives = 46/81 (56%)
 Frame = -1

Query: 795 KAMDAAXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
           KAM    + MNL  +  +M +FE Q E +++ SS M +A+         + + + L+ QV
Sbjct: 108 KAMRQMNRQMNLPALQKIMREFEIQNEKMEIVSSTMNDAIDDALEGDEEEEETEELVNQV 167

Query: 615 ADEAGLELNMELPSGVPSTSI 553
            DE G+++N EL  G PST++
Sbjct: 168 LDEIGIDVNSEL-VGAPSTAV 187


>07_01_0908 +
           7653813-7653849,7655220-7655350,7655946-7656020,
           7657007-7657111,7657648-7657911,7658474-7658614
          Length = 250

 Score = 43.6 bits (98), Expect = 2e-04
 Identities = 25/82 (30%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
 Frame = -1

Query: 795 KAMDAAXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQ-GDVDNLLQQ 619
           KAM    + +NL  +  +M +FE Q E +++ S  M +A+         Q  + + L+ Q
Sbjct: 133 KAMGQMNRQLNLPGLQRIMMEFERQNERMEMTSEVMGDAIDDALEGDEDQEEETEELVNQ 192

Query: 618 VADEAGLELNMELPSGVPSTSI 553
           V DE G+++N EL    PS ++
Sbjct: 193 VLDEIGIDINQELVK-APSAAV 213


>10_07_0131 + 13258506-13258628,13258737-13258889
          Length = 91

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = -1

Query: 681 AMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSG-VPSTSIGTATVVSQEQDELTQR 505
           A S    T    GD+ + LQ +  EA L  N  +PS  V   +      + +E D+L++R
Sbjct: 9   ASSAARITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHREVDDLSER 68

Query: 504 LARLRQA 484
           LA L  A
Sbjct: 69  LAELLAA 75


>07_03_1627 +
           28229292-28229615,28229735-28229812,28231105-28231164,
           28231750-28232040,28232149-28232277
          Length = 293

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -3

Query: 547 RNCCFPRTRRTHTETCQVETS 485
           RNCC PR + T T++C++ T+
Sbjct: 37  RNCCLPRLKTT-TQSCRITTA 56


>07_01_0680 +
           5128023-5128212,5128629-5128667,5129496-5129637,
           5129727-5129847,5129951-5130013,5130114-5130203,
           5130572-5130619,5131114-5131260
          Length = 279

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 15/51 (29%), Positives = 30/51 (58%)
 Frame = -3

Query: 511 TETCQVETSRINVNQFNWIRAIVIHVNVQTLKVWLLVIKL*TNVLIFSEIW 359
           TE  + + S I + Q+  +  ++IHV+V  ++VW +V+K    +++   IW
Sbjct: 179 TENLRSQNSGIFI-QWIAMEKLLIHVSVDRMRVWSMVMKY--RIMVPKVIW 226


>02_04_0562 -
           23886272-23886357,23886456-23886571,23887045-23887127,
           23887683-23887829,23887946-23887993,23888166-23888384,
           23889370-23889541,23889636-23889700,23890386-23890512,
           23891358-23891450,23891520-23891629,23891722-23891868,
           23892161-23892473,23892580-23893178
          Length = 774

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 17/75 (22%), Positives = 30/75 (40%)
 Frame = -1

Query: 762 LEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNME 583
           +EK+  ++ K E + +D+D Q       + +     V   +V +    + D  G E   E
Sbjct: 678 IEKVDAMLQKLEKEIDDVDAQIGNRWQILDRDLDGKVTPEEVASAAAYLKDTIGKEGVQE 737

Query: 582 LPSGVPSTSIGTATV 538
           L S +     G   V
Sbjct: 738 LVSNLSKDKDGKIRV 752


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,326,426
Number of Sequences: 37544
Number of extensions: 359460
Number of successful extensions: 879
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)