Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c10
         (822 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.       27   0.92 
AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.       27   0.92 
AY146737-1|AAO12097.1|  119|Anopheles gambiae odorant-binding pr...    25   3.7  
AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein pr...    24   4.9  
AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.       24   4.9  

>AF387858-1|AAL58708.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 26.6 bits (56), Expect = 0.92
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
 Frame = -1

Query: 738 DKFESQFEDLD----VQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSG 571
           D+ ES+ ED      ++    +   S   +T    GD  + L++ A+E  +  +     G
Sbjct: 110 DRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTVRRSSRSTKG 169

Query: 570 VP----STSIGTATVVSQEQDELTQRLARLRQAE 481
           VP      + G   + S E+  +TQ     R  E
Sbjct: 170 VPPQRFRETTGMVRIFSNERILITQEYCEPRTFE 203


>AF387857-1|AAL58707.1|  215|Anopheles gambiae integrase protein.
          Length = 215

 Score = 26.6 bits (56), Expect = 0.92
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 8/94 (8%)
 Frame = -1

Query: 738 DKFESQFEDLD----VQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSG 571
           D+ ES+ ED      ++    +   S   +T    GD  + L++ A+E  +  +     G
Sbjct: 116 DRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTVRRSSRSTKG 175

Query: 570 VP----STSIGTATVVSQEQDELTQRLARLRQAE 481
           VP      + G   + S E+  +TQ     R  E
Sbjct: 176 VPPQRFRETTGMVRIFSNERILITQEYCEPRTFE 209


>AY146737-1|AAO12097.1|  119|Anopheles gambiae odorant-binding
           protein AgamOBP27 protein.
          Length = 119

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 691 VGRLDIQILKLTLELVH*CRN 753
           +GRLD+  L   + LVH CRN
Sbjct: 1   MGRLDLVCLLAIVLLVHSCRN 21


>AF387862-2|AAL56548.1|  942|Anopheles gambiae pol polyprotein
           protein.
          Length = 942

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -1

Query: 738 DKFESQFEDLD----VQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSG 571
           D+ ES+ ED      ++    +   S   +T    GD  + L++ A+E  +  +     G
Sbjct: 340 DRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTVRRSSRSTKG 399

Query: 570 VP 565
           VP
Sbjct: 400 VP 401


>AF387850-1|AAL58705.1|  209|Anopheles gambiae integrase protein.
          Length = 209

 Score = 24.2 bits (50), Expect = 4.9
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -1

Query: 738 DKFESQFEDLD----VQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSG 571
           D+ ES+ ED      ++    +   S   +T    GD  + L++ A+E  +  +     G
Sbjct: 110 DRLESEEEDSTDETLIEEELTDTDSSMCDSTNEDDGDDGHTLERAAEELTVRRSSRSTKG 169

Query: 570 VP 565
           VP
Sbjct: 170 VP 171


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 777,449
Number of Sequences: 2352
Number of extensions: 16437
Number of successful extensions: 53
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 87318630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)