Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c10
(822 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF106583-3|AAD03134.1| 205|Caenorhabditis elegans Hypothetical ... 110 1e-24
AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical ... 52 7e-07
AL032657-11|CAA21737.3| 372|Caenorhabditis elegans Hypothetical... 30 1.7
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 30 1.7
AF067937-3|AAF99913.2| 559|Caenorhabditis elegans Hypothetical ... 30 2.3
Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical pr... 29 3.0
U70858-5|AAB09179.2| 294|Caenorhabditis elegans Serpentine rece... 29 4.0
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 28 7.0
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 28 7.0
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 28 7.0
U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical pr... 28 7.0
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 28 7.0
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 28 7.0
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 9.3
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 9.3
>AF106583-3|AAD03134.1| 205|Caenorhabditis elegans Hypothetical
protein F23C8.6 protein.
Length = 205
Score = 110 bits (265), Expect = 1e-24
Identities = 55/102 (53%), Positives = 69/102 (67%)
Frame = -1
Query: 795 KAMDAAXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
KAM++A KSMNLEK+ LMD+FE FEDLDV + ME M TT P+ VD L+ +
Sbjct: 103 KAMESAMKSMNLEKVQQLMDRFERDFEDLDVTTKTMEKTMDGTTVLNAPKSQVDALIAEA 162
Query: 615 ADEAGLELNMELPSGVPSTSIGTATVVSQEQDELTQRLARLR 490
AD+AG+ELN ELPS VP T++ T T E +LT+RLA LR
Sbjct: 163 ADKAGIELNQELPSNVP-TALPTGTQAVSEDKDLTERLAALR 203
>AL110485-7|CAB60355.1| 237|Caenorhabditis elegans Hypothetical
protein Y46G5A.12 protein.
Length = 237
Score = 51.6 bits (118), Expect = 7e-07
Identities = 25/82 (30%), Positives = 47/82 (57%)
Frame = -1
Query: 795 KAMDAAXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
KAM + + +NL +I +M +FE Q E +D++ M +A+ + + D ++ QV
Sbjct: 108 KAMQSMNRQLNLPQIQKIMMEFEKQSEIMDMKEEVMGDAIDDALGDAGDEEETDQIVNQV 167
Query: 615 ADEAGLELNMELPSGVPSTSIG 550
DE G+++ E+ +G+PS + G
Sbjct: 168 LDELGIQMGEEM-AGLPSAAGG 188
>AL032657-11|CAA21737.3| 372|Caenorhabditis elegans Hypothetical
protein Y47H9C.11 protein.
Length = 372
Score = 30.3 bits (65), Expect = 1.7
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1
Query: 768 MNLEKISTLMDKFESQFEDLDVQSSYMENAMSQTTTTT 655
+ L +L KF ED D +SY+ENAM Q T T
Sbjct: 156 LKLNNQESLQQKFRKSDEDED-SNSYLENAMDQLETIT 192
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 786 DAAXKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 3687 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 3746
Query: 615 ADEAGLELN 589
A + E++
Sbjct: 3747 ASQVANEID 3755
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 786 DAAXKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 4641 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 4700
Query: 615 ADEAGLELN 589
A + E++
Sbjct: 4701 ASQVANEID 4709
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 786 DAAXKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 5544 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 5603
Query: 615 ADEAGLELN 589
A + E++
Sbjct: 5604 ASQVANEID 5612
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 786 DAAXKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 6447 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 6506
Query: 615 ADEAGLELN 589
A + E++
Sbjct: 6507 ASQVANEID 6515
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Frame = -1
Query: 786 DAAXKSMNLEKISTLMDKFESQFEDL---DVQSSYMENAMSQTTTTTVPQGDVDNLLQQV 616
D K NL++IS L+D ES + D+ DV + + + + + LL+Q
Sbjct: 7350 DLDNKIANLQRISELLDPLESAYADVRFFDVDAEQTRHQYDDVLNDVAAELEDETLLKQS 7409
Query: 615 ADEAGLELN 589
A + E++
Sbjct: 7410 ASQVANEID 7418
>AF067937-3|AAF99913.2| 559|Caenorhabditis elegans Hypothetical
protein F22F7.3 protein.
Length = 559
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = -1
Query: 705 VQSSYMENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQE 526
+++ Y+ N +++ VP DN+ Q ++D+ LE++ME+ S + S I + +
Sbjct: 398 MKNMYLTN-LTKVRDGAVPVNPGDNITQLISDQHLLEIDMEMKSILTSEPIAALSATLPK 456
Query: 525 QD 520
D
Sbjct: 457 TD 458
>Z68338-2|CAA92759.1| 411|Caenorhabditis elegans Hypothetical
protein T24B8.2 protein.
Length = 411
Score = 29.5 bits (63), Expect = 3.0
Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)
Frame = -1
Query: 780 AXKSMNLEKISTLMDKFESQFEDLDVQSSYMENAMSQ--TTTTTVPQGDVDNLLQQVADE 607
A + ++ +KI MD + ++ +E A+S D++ L+ + +
Sbjct: 314 ARQGLSPDKIHETMDDVVNSMDEY----KEIEEAISSPFVNANGFNDADLEQELEDLISD 369
Query: 606 AGLELNMELPSGVPSTSIGTATV-VSQEQDELTQRLARLRQA 484
++ LP P+ G V+ E+D+L +RLARLRQA
Sbjct: 370 NKKNESVHLPEA-PTNRFGLFDKEVTPEEDQLEKRLARLRQA 410
>U70858-5|AAB09179.2| 294|Caenorhabditis elegans Serpentine
receptor, class x protein34 protein.
Length = 294
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 378 RTFVYNLITNNHTFKV*TFTCITIALIQLN*FTFIL 485
+ F YN + N T +V F+ IT++L+ +N + FI+
Sbjct: 107 KPFSYNTVFNPRTTRVIIFSVITLSLLIVNCWLFII 142
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
T06D8.1b protein.
Length = 3653
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 699 SSYMENAMSQTTTTTVPQGDVDNLLQQVADE-AGLELNMELPSGVPSTSIGTATVVSQE 526
SS +EN MS+T++ + + Q D+ AG E +P+ V + GT+T S E
Sbjct: 2928 SSTIENVMSKTSSEEAAEKKIIGEHQTGKDDDAGKEDEDNMPAFVTANPAGTSTTESAE 2986
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 699 SSYMENAMSQTTTTTVPQGDVDNLLQQVADE-AGLELNMELPSGVPSTSIGTATVVSQE 526
SS +EN MS+T++ + + Q D+ AG E +P+ V + GT+T S E
Sbjct: 2928 SSTIENVMSKTSSEEAAEKKIIGEHQTGKDDDAGKEDEDNMPAFVTANPAGTSTTESAE 2986
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 699 SSYMENAMSQTTTTTVPQGDVDNLLQQVADE-AGLELNMELPSGVPSTSIGTATVVSQE 526
SS +EN MS+T++ + + Q D+ AG E +P+ V + GT+T S E
Sbjct: 2928 SSTIENVMSKTSSEEAAEKKIIGEHQTGKDDDAGKEDEDNMPAFVTANPAGTSTTESAE 2986
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 699 SSYMENAMSQTTTTTVPQGDVDNLLQQVADE-AGLELNMELPSGVPSTSIGTATVVSQE 526
SS +EN MS+T++ + + Q D+ AG E +P+ V + GT+T S E
Sbjct: 2928 SSTIENVMSKTSSEEAAEKKIIGEHQTGKDDDAGKEDEDNMPAFVTANPAGTSTTESAE 2986
>U97007-6|AAB52296.3| 468|Caenorhabditis elegans Hypothetical
protein ZC196.4 protein.
Length = 468
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 759 EKISTLMDKFESQFEDLDVQSSYMENAM 676
EK+++L+D FE+ F L S ENA+
Sbjct: 305 EKVASLLDTFETLFNQLGELSKISENAL 332
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 699 SSYMENAMSQTTTTTVPQGDVDNLLQQVADE-AGLELNMELPSGVPSTSIGTATVVSQE 526
SS +EN MS+T++ + + Q D+ AG E +P+ V + GT+T S E
Sbjct: 2928 SSTIENVMSKTSSEEAAEKKIIGEHQTGKDDDAGKEDEDNMPAFVTANPAGTSTTESAE 2986
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 28.3 bits (60), Expect = 7.0
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -1
Query: 699 SSYMENAMSQTTTTTVPQGDVDNLLQQVADE-AGLELNMELPSGVPSTSIGTATVVSQE 526
SS +EN MS+T++ + + Q D+ AG E +P+ V + GT+T S E
Sbjct: 2928 SSTIENVMSKTSSEEAAEKKIIGEHQTGKDDDAGKEDEDNMPAFVTANPAGTSTTESAE 2986
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -1
Query: 687 ENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDE 517
E+ ++TTTTTV + +D+ Q++ D+ E E P V +T T T+ S+E D+
Sbjct: 3426 EHHYTETTTTTVTKEVIDD-SQEMGDDD--EPKQESPQVVETT---TTTMTSREYDD 3476
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 27.9 bits (59), Expect = 9.3
Identities = 20/57 (35%), Positives = 33/57 (57%)
Frame = -1
Query: 687 ENAMSQTTTTTVPQGDVDNLLQQVADEAGLELNMELPSGVPSTSIGTATVVSQEQDE 517
E+ ++TTTTTV + +D+ Q++ D+ E E P V +T T T+ S+E D+
Sbjct: 3426 EHHYTETTTTTVTKEVIDD-SQEMGDDD--EPKQESPQVVETT---TTTMTSREYDD 3476
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,222,516
Number of Sequences: 27780
Number of extensions: 368923
Number of successful extensions: 1018
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -