Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c09
         (174 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q56913 Cluster: Wzx protein; n=2; Yersinia|Rep: Wzx pro...    31   5.0  
UniRef50_Q9YVV7 Cluster: Putative uncharacterized protein MSV135...    30   8.8  

>UniRef50_Q56913 Cluster: Wzx protein; n=2; Yersinia|Rep: Wzx
           protein - Yersinia enterocolitica
          Length = 418

 Score = 31.1 bits (67), Expect = 5.0
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +2

Query: 17  VPVFIFSVINSLFIVTHVTFLVDLTRLPQFWVKNSNFSRISYK 145
           +PV+ F  I  L IVT++  +  L+ LP F++   N + + Y+
Sbjct: 128 MPVWFFQGIEKLSIVTNLMIVAKLSMLPLFFIFVDNDADVKYR 170


>UniRef50_Q9YVV7 Cluster: Putative uncharacterized protein MSV135;
           n=1; Melanoplus sanguinipes entomopoxvirus|Rep: Putative
           uncharacterized protein MSV135 - Melanoplus sanguinipes
           entomopoxvirus (MsEPV)
          Length = 239

 Score = 30.3 bits (65), Expect = 8.8
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -1

Query: 111 TQNCGSLVKSTKKVTCVTIKSELITEKINTGTCTTAL 1
           T NC ++ ++  K   V+I ++++++ IN+G+C T +
Sbjct: 53  TFNCSNINQNYLKSLFVSIDNKIVSKNINSGSCVTMI 89


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,603,543
Number of Sequences: 1657284
Number of extensions: 1758894
Number of successful extensions: 3759
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3759
length of database: 575,637,011
effective HSP length: 37
effective length of database: 514,317,503
effective search space used: 10286350060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)