Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c09
         (174 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0605 + 25425964-25426293                                         26   3.7  
11_01_0643 - 5174154-5174254,5174296-5174346,5174611-5174739,517...    26   4.9  
07_01_0601 + 4464745-4465010,4465274-4466582                           25   6.5  
10_01_0254 - 2677811-2677911,2678132-2678313,2678646-2678694,268...    25   8.6  
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13...    25   8.6  

>11_06_0605 + 25425964-25426293
          Length = 109

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -1

Query: 99  GSLVKSTKKVTCVTIKSELITEKINTG 19
           GSLV ST KV  + +K EL+    N G
Sbjct: 79  GSLVGSTSKVMAMHLKGELVPMLKNAG 105


>11_01_0643 -
           5174154-5174254,5174296-5174346,5174611-5174739,
           5174869-5175118,5175220-5177157
          Length = 822

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 32  FSVINSLFIVTHVTFLVDLTRLPQFWVKNSNFSRISYK*SLAY*G 166
           + V +++ +  +  F++D+TRL    V  S   RIS K    Y G
Sbjct: 763 YDVTDAILMYDYFWFMLDVTRLLVVLVAGSERDRISLKALFGYYG 807


>07_01_0601 + 4464745-4465010,4465274-4466582
          Length = 524

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 108 GLRIQISVGLAINNLWRIEE 167
           GLR + + G+A+N +W +E+
Sbjct: 481 GLRARFAPGMAVNFVWAVED 500


>10_01_0254 -
           2677811-2677911,2678132-2678313,2678646-2678694,
           2680659-2680755,2681119-2681436
          Length = 248

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +2

Query: 5   AVVQVPVFIFSVINSLFIVTHVTFLVDLTRLPQFWVKNSNFSRI 136
           AV ++  + F    +  I++     + +  +P +W KN   SRI
Sbjct: 30  AVREIATYWFEDQRASTIISRTPMELAVREIPTYWFKNQRASRI 73


>06_01_0007 +
           130582-131544,132187-132264,132615-132732,133228-133271,
           133389-133448,133536-133588,133671-133837,133963-134167,
           134989-135046,135225-135281,135363-135608,135938-136002,
           136090-136158,136238-136331,136467-136607,137159-137304,
           137452-138110,138222-138335,138406-138560
          Length = 1163

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 90  VKSTKKVTCVTIKSELITEKINTG 19
           +K +KKV C+T     I E +NTG
Sbjct: 283 MKMSKKVACLTKHPSNIRELLNTG 306


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,965,576
Number of Sequences: 37544
Number of extensions: 43554
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)