Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c09
         (174 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    26   3.1  
AF039045-5|AAB94198.1|  154|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF039045-1|AAK71362.1|  154|Caenorhabditis elegans Hypothetical ...    26   4.1  
AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine re...    25   5.4  

>AL034364-4|CAA22250.2|  290|Caenorhabditis elegans Hypothetical
           protein W06D4.2 protein.
          Length = 290

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +2

Query: 32  FSVINSLFIVTHVTFLVDLTRLPQFWVKNSNF 127
           FS++ SLF + HVT L    ++   +VK+ NF
Sbjct: 226 FSIVISLFNIVHVTGLYIHFQVIMQFVKDKNF 257


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = +1

Query: 13  TGTSIYF--FCY*FTFYSNTCYF 75
           +GT+I F  FC  F F+   CYF
Sbjct: 482 SGTTINFPIFCLIFAFFDKNCYF 504


>AF039045-5|AAB94198.1|  154|Caenorhabditis elegans Hypothetical
           protein F15E11.1 protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 132 LLKFEFLTQNCGSLVKSTKKVTCVTIKSELITEKI--NTGTCTT 7
           + KF+ L Q  G+ ++++K V     +S  I EK+  NTG  TT
Sbjct: 25  VFKFQVLHQYTGNALEASKWVKLEPNQSAQILEKVHYNTGPFTT 68


>AF039045-1|AAK71362.1|  154|Caenorhabditis elegans Hypothetical
           protein F15E11.14 protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -1

Query: 132 LLKFEFLTQNCGSLVKSTKKVTCVTIKSELITEKI--NTGTCTT 7
           + KF+ L Q  G+ ++++K V     +S  I EK+  NTG  TT
Sbjct: 25  VFKFQVLHQYTGNALEASKWVKLEPNQSAQILEKVHYNTGPFTT 68


>AF036692-5|AAS47681.1|  319|Caenorhabditis elegans Serpentine
           receptor, class x protein13 protein.
          Length = 319

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 23  VFIFSVINSLFIVTHVTFLVDLTRLPQFW 109
           +FIFS  N+L I+  V F+      P FW
Sbjct: 135 IFIFSRQNTLVIIGIVWFIAFCHIFPYFW 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,570,792
Number of Sequences: 27780
Number of extensions: 45484
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 12,740,198
effective HSP length: 38
effective length of database: 11,684,558
effective search space used: 222006602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)