Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c06
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 283 3e-77
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 50 4e-07
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom... 49 9e-07
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch... 48 2e-06
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 45 1e-05
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 44 3e-05
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 42 1e-04
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 41 2e-04
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 40 3e-04
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa... 40 6e-04
SPBC9B6.09c |mdl1||mitochondrial peptide-transporting ATPase|Sch... 37 0.003
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 34 0.021
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 34 0.027
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 33 0.036
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 32 0.084
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 32 0.084
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 32 0.11
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 32 0.11
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 32 0.11
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 30 0.34
SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyc... 29 0.78
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 29 0.78
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 29 1.0
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 29 1.0
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 29 1.0
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 28 1.4
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 28 1.8
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa... 28 1.8
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi... 28 1.8
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 1.8
SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces ... 26 5.5
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 26 5.5
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 5.5
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 26 7.3
SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual 25 9.6
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 283 bits (693), Expect = 3e-77
Identities = 142/226 (62%), Positives = 173/226 (76%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIR 593
+VLLGENGTGKTTF + +A N + L IS KPQ I+PK QG VR L KIR
Sbjct: 378 IVLLGENGTGKTTFCKWMAKNSD----------LKISMKPQTIAPKFQGTVRMLFLKKIR 427
Query: 592 DAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLD 413
A+++ +F ++V KP+ I+ I+DQEV NLSGGELQRVA+ L LG PADVYLIDEPSAYLD
Sbjct: 428 AAFLNGKFQSEVCKPLSIDNIIDQEVLNLSGGELQRVAICLALGMPADVYLIDEPSAYLD 487
Query: 412 SE*RLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLN 233
SE R++A+KVI+RFI+++++T F+VEHDFIMATYLADRVI+FEG PS +A + PQSLL
Sbjct: 488 SEQRIIASKVIRRFIVNSRKTAFIVEHDFIMATYLADRVILFEGQPSRDARCNPPQSLLT 547
Query: 232 GMNKFLELLGITFRRDPNNFRPRINKHASVKDIEQKRAGQYFFLED 95
GMN FL+ L +TFRRDPN RPRINK S D EQK AG YFFLE+
Sbjct: 548 GMNTFLKNLDVTFRRDPNTLRPRINKFDSQMDQEQKNAGNYFFLEN 593
Score = 98.7 bits (235), Expect = 9e-22
Identities = 73/214 (34%), Positives = 106/214 (49%), Gaps = 27/214 (12%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIR 593
L L+G NG GK+T +++L+G ++P+ G P + Q ++ D I+
Sbjct: 106 LGLVGTNGIGKSTALKILSGKMKPNLGRYDNPPDWAEVVKYFRGSELQNFFTKVVEDNIK 165
Query: 592 DAYIHPQFLTDVMKPMK------------------IEEIMD---------QEVQNLSGGE 494
A I PQ++ + + +K EE+MD +EV +LSGGE
Sbjct: 166 -ALIKPQYVDHIPRAIKTGDKTVSGLIKARANNNNFEEVMDHTDLQNLLNREVGHLSGGE 224
Query: 493 LQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVVEHDFIMAT 314
LQR A+ + ADVY+ DEPS+YLD + RL A +VI R +L VVEHD +
Sbjct: 225 LQRFAIAAVATQKADVYMFDEPSSYLDIKQRLKAGRVI-RSLLATTNYVIVVEHDLSVLD 283
Query: 313 YLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLE 212
YL+D V V G PS P S+ G+N FL+
Sbjct: 284 YLSDFVCVLYGVPSMYGVVTLPYSVREGINIFLD 317
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 50.0 bits (114), Expect = 4e-07
Identities = 46/191 (24%), Positives = 86/191 (45%), Gaps = 10/191 (5%)
Frame = -1
Query: 778 RFLVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQL--HISYKPQKISPKSQGLVRSLLH 605
+F +++G G+GK+T L G L G P + I+Y PQ ++ + ++L
Sbjct: 608 QFTLVVGSTGSGKSTLAMALLGELHVISGKMTTPSISQRIAYVPQAAWLRNGTIRSNILF 667
Query: 604 DKIRDAYIHPQFLTDVMKPMKIEEIMDQEV-------QNLSGGELQRVALVLCLGKPADV 446
+ D + Q + + + D ++ +LSGG+ QRV+L L A+V
Sbjct: 668 GEPYDEERYFQIIKACCLDSDLNSMNDGDLTYIHSNGSSLSGGQKQRVSLARALYSNAEV 727
Query: 445 YLIDEPSAYLD-SE*RLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFEGTPSS 269
Y+ D+ + LD S R + +L K T + H+ + +A+ VIV + + +
Sbjct: 728 YIFDDIFSALDVSTSRKIYESCFLSTLLQHK-TIILFTHNVSLCLPIAENVIVLKNSTAQ 786
Query: 268 NATAHAPQSLL 236
+ + Q L+
Sbjct: 787 LVSPDSIQELV 797
>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 48.8 bits (111), Expect = 9e-07
Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 8/140 (5%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPDEG-SGQLPQLHISYKPQ------KISPKSQGLVRSLL 608
++G NG GK+T +++L L P G + P+L I+Y Q ++ + +
Sbjct: 549 VVGPNGAGKSTMLKLLIEQLHPTSGIVSRHPRLRIAYFAQHHVDTLDLNLNALSFLAKTF 608
Query: 607 HDKIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLG-KPADVYLIDE 431
K + Y V P+ +++++ LSGG+ RVA CLG + + ++DE
Sbjct: 609 PGKGEEEYRRHLGAFGVSGPLALQKMI-----TLSGGQKSRVAFA-CLGLQNPHILILDE 662
Query: 430 PSAYLDSE*RLVAAKVIKRF 371
P+ +LD E + +KRF
Sbjct: 663 PTNHLDMESMDALTRAVKRF 682
Score = 32.3 bits (70), Expect = 0.084
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = -1
Query: 538 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHA 359
+E+ + SGG R++L L D+ L+DEPS LD + + + ++
Sbjct: 345 QEMQSHATKTFSGGWRMRLSLARALFCQPDLLLLDEPSNMLD----VPSIAFLSEYLQTY 400
Query: 358 KRTGFVVEHDFIMATYLADRVI 293
K VV HD +A +I
Sbjct: 401 KNIVLVVSHDRSFLNEVATDII 422
>SPCC417.08 |tef3||translation elongation factor
eEF3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1047
Score = 48.0 bits (109), Expect = 2e-06
Identities = 37/162 (22%), Positives = 78/162 (48%), Gaps = 1/162 (0%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDA 587
L G NG+GK+T +R + N + + L +++ + + S V +L D
Sbjct: 465 LCGPNGSGKSTLMRAIV-NGQVEGFPTHLRTVYVEHDIDE-SEADTPSVDFILQDPAVPI 522
Query: 586 YIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 407
+ + + + +E+++ + +LSGG ++AL + K D+ L+DEP+ +LD
Sbjct: 523 KDRDEIVKALKENSFTDELINMPIGSLSGGWKMKLALTRAMFKNPDILLLDEPTNHLD-- 580
Query: 406 *RLVAAKVIKRFILHAKR-TGFVVEHDFIMATYLADRVIVFE 284
+V ++ F+++ K + +V HD ++ +I +E
Sbjct: 581 --VVNVAWLENFLVNQKDVSSIIVSHDSGFLDHVVQAIIHYE 620
Score = 35.1 bits (77), Expect = 0.012
Identities = 17/56 (30%), Positives = 29/56 (51%)
Frame = -1
Query: 538 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRF 371
E + ++ LSGG+ ++ L C V ++DEP+ YLD + +K +K F
Sbjct: 894 ELVSHSRIKGLSGGQKVKLVLAACTWLRPHVIVLDEPTNYLDRDSLGALSKGLKNF 949
Score = 31.1 bits (67), Expect = 0.19
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEG 692
+ ++G NG GK+T I++L G L P G
Sbjct: 703 IAVIGPNGAGKSTLIKVLTGELLPTVG 729
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 44.8 bits (101), Expect = 1e-05
Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Frame = -1
Query: 769 VLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLH-ISYKPQKISPKSQGLVRSLLHD--K 599
+++G G+GK++ I L G L ++GS LP+ +SY Q ++ + ++L D
Sbjct: 645 IVIGPTGSGKSSLISALLGELSLNKGSYNLPRSKGVSYVSQVPWLRNATIRDNILFDYPY 704
Query: 598 IRDAYIHP----QFLTDVMK--PMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLI 437
I + Y LTD+ + EI ++ V LSGG+ QR+AL + P + L+
Sbjct: 705 IEERYKKVIQACGLLTDLQSFVASDLTEIGEKGV-TLSGGQKQRIALARAVYSPTSIVLM 763
Query: 436 DEPSAYLD 413
D+ + LD
Sbjct: 764 DDVFSALD 771
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 44.0 bits (99), Expect = 3e-05
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 4/166 (2%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAG-NLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDK-IR 593
++G NG GK+T +R + +E ++ +++ Q S ++ + DK +
Sbjct: 475 VVGHNGCGKSTLLRAIGDYKVENFPSPDEVKTCFVAHSLQG-EDTSMAILDFVAQDKALL 533
Query: 592 DAYIHPQFLTDVMKPMKIE-EIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYL 416
+ Q D + + E+ + V +LSGG ++ L + + AD+ L+DEP+ +L
Sbjct: 534 TMNVTRQEAADALHSVGFTAEMQENPVASLSGGWKMKLELARAMLQKADILLLDEPTNHL 593
Query: 415 DSE*RLVAAKVIKRFILHAKR-TGFVVEHDFIMATYLADRVIVFEG 281
D + ++ ++ K T +V HD ++ +I +EG
Sbjct: 594 D----VANIAWLEAYLTSQKNITCLIVSHDSSFLDHVCTDIIHYEG 635
Score = 36.3 bits (80), Expect = 0.005
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEGS-GQLPQLHISYKPQ 650
+ +LG NG GK+T I++L G + P EG + P L + Y Q
Sbjct: 722 VAILGPNGAGKSTLIKVLIGEVIPQEGKVFKHPNLRVGYVAQ 763
Score = 32.7 bits (71), Expect = 0.063
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -1
Query: 517 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 407
+ +LSGG+ +V + CL + ++DEP+ +LD +
Sbjct: 908 ISSLSGGQKVKVVIAACLWNNPQLLVLDEPTNFLDRD 944
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 41.9 bits (94), Expect = 1e-04
Identities = 33/117 (28%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Frame = -1
Query: 550 PMKIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRF 371
P + Q+ +LSGG+ QR+A+ L + + L+DE ++ LDS + KV++
Sbjct: 1245 PNGYNTLCGQKGSSLSGGQKQRIAIARALIRNPKILLLDEATSALDSH----SEKVVQEA 1300
Query: 370 ILHAK--RTGFVVEHDFIMATYLADRVIVFEGTPSSNATAHAPQSLLNGMNKFLELL 206
+ A RT + H + + AD + VF+G + A HA L+ ++ EL+
Sbjct: 1301 LNAASQGRTTVAIAHR-LSSIQDADCIFVFDGGVIAEAGTHA--ELVKQRGRYYELV 1354
Score = 34.7 bits (76), Expect = 0.016
Identities = 24/93 (25%), Positives = 42/93 (45%)
Frame = -1
Query: 508 LSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVVEHD 329
+SGG+ QR+A+ + + L+DE ++ LDS+ ++ K + RT V+ H
Sbjct: 568 MSGGQKQRIAIARAVISDPKILLLDEATSALDSKSEVLVQKALDN--ASRSRTTIVIAHR 625
Query: 328 FIMATYLADRVIVFEGTPSSNATAHAPQSLLNG 230
+ AD ++V +H LNG
Sbjct: 626 -LSTIRNADNIVVVNAGKIVEQGSHNELLDLNG 657
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 40.7 bits (91), Expect = 2e-04
Identities = 45/169 (26%), Positives = 73/169 (43%), Gaps = 20/169 (11%)
Frame = -1
Query: 778 RFLVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLV---RSLL 608
+ + L+GE+G GK+T +R+L + + GS + I S G+V +L
Sbjct: 611 KVIALVGESGGGKSTIMRILLRFFDVNSGSITIDDQDIRNVTLSSLRSSIGVVPQDSTLF 670
Query: 607 HDKI--RDAYIHPQFLTD-VMKPMKIEEIMDQEVQ--------------NLSGGELQRVA 479
+D I Y P + + K +I D+ +Q LSGGE QRVA
Sbjct: 671 NDTILYNIKYAKPSATNEEIYAAAKAAQIHDRILQFPDGYNSRVGERGLKLSGGEKQRVA 730
Query: 478 LVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVVEH 332
+ + K + L+DE ++ LD+ + R L + RT V+ H
Sbjct: 731 VARAILKDPSIILLDEATSALDTNTERQIQAALNR--LASGRTAIVIAH 777
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 40.3 bits (90), Expect = 3e-04
Identities = 42/180 (23%), Positives = 90/180 (50%), Gaps = 17/180 (9%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDE---GSGQLPQLHISYKPQKIS-----PKSQG--L 623
+ ++G +G+GK+T + +L ++ L + ++ +K++ P G +
Sbjct: 1131 VAIVGISGSGKSTLVELLRKTYPSEDIYIDGYPLTNIDTNWLLKKVAIVDQKPHLLGSTI 1190
Query: 622 VRSLLHDKIRDAY-----IHPQFLTDVMK--PMKIEEIMDQEVQNLSGGELQRVALVLCL 464
+ SLL+ RD + ++T+V++ P ++ + + +N SGG++QR+A L
Sbjct: 1191 LESLLYGVDRDINSVMDALDKTYMTEVIQNLPNGLDTPLLEFSKNFSGGQIQRLAFARAL 1250
Query: 463 GKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVVEHDFIMATYLADRVIVFE 284
+ + ++DE ++ LDS+ L+ K I+ + T ++ H + LADR+IV +
Sbjct: 1251 LRNPRLLILDECTSALDSKSSLLLEKTIQ----NLSCTVLIITHQPSLMK-LADRIIVMD 1305
Score = 39.1 bits (87), Expect = 7e-04
Identities = 40/165 (24%), Positives = 74/165 (44%), Gaps = 19/165 (11%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLV--RSLLHDK-- 599
++G +G+GK+TFI +L P G+ L + + + + LV + ++ D
Sbjct: 467 IIGPSGSGKSTFISLLLRYFSPTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTI 526
Query: 598 -----IRDAYIHPQFLTDVMKPMKIEEI---MDQEVQ------NLSGGELQRVALVLCLG 461
+R+ +V + ++E DQ +LSGG+ QR+AL L
Sbjct: 527 RENIIMRNENASESDFEEVCRLALVDEFALTFDQSYDTPCKEASLSGGQQQRIALARALL 586
Query: 460 KPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAK-RTGFVVEHD 329
+ ++ ++DEP++ LD + V+ H K +T V+ HD
Sbjct: 587 RDTEILILDEPTSALDP---ITKNLVMDAIRAHRKGKTTLVITHD 628
>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 618
Score = 39.5 bits (88), Expect = 6e-04
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 13/133 (9%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDK-- 599
+ ++G+NGTGK+T + ++ G L P EG+ Y K++ SQ L +DK
Sbjct: 419 VAIVGKNGTGKSTLLNLITGLLIPIEGNVS------RYSGLKMAKYSQHSADQLPYDKSP 472
Query: 598 ---IRDAYIHPQF-------LTDVMKPMKIEEI-MDQEVQNLSGGELQRVALVLCLGKPA 452
I D Y P+F V+ + + E++ LS G RV +
Sbjct: 473 LEYIMDTY-KPKFPERELQQWRSVLGKFGLSGLHQTSEIRTLSDGLKSRVVFAALALEQP 531
Query: 451 DVYLIDEPSAYLD 413
+ L+DEP+ +LD
Sbjct: 532 HILLLDEPTNHLD 544
Score = 33.5 bits (73), Expect = 0.036
Identities = 17/44 (38%), Positives = 27/44 (61%)
Frame = -1
Query: 538 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 407
+E+M + +++SGG RVAL L + L+DEP+ +LD E
Sbjct: 211 QEMMAKPTKDMSGGWRMRVALSRALFIKPSLLLLDEPTNHLDLE 254
>SPBC9B6.09c |mdl1||mitochondrial peptide-transporting
ATPase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 726
Score = 37.1 bits (82), Expect = 0.003
Identities = 21/73 (28%), Positives = 38/73 (52%)
Frame = -1
Query: 508 LSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVVEHD 329
LSGG+ QR+A+ L + ++DE ++ LD E ++ K I+ + + T + H
Sbjct: 620 LSGGQKQRIAIARALLRNPAFLILDEATSALDGEAEVMVDKTIQSLMHNRSMTTITIAHK 679
Query: 328 FIMATYLADRVIV 290
+ AD++IV
Sbjct: 680 -LATIRRADQIIV 691
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 34.3 bits (75), Expect = 0.021
Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Frame = -1
Query: 547 MKIEEIMDQEVQNLSGGELQRVALVLCLG----KPADVYLIDEPSAYLD 413
+KI I + LSGG+ VAL L + KPA +Y++DE A LD
Sbjct: 1073 VKIGSIWKDSLAELSGGQRSLVALALIMSLLKYKPAPMYILDEIDAALD 1121
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 33.9 bits (74), Expect = 0.027
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)
Frame = -1
Query: 523 QEVQNLSGGE--LQRVALVLCLG--KPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAK 356
+ + NLSGGE L +ALV L KP +Y++DE A LD + + A IK K
Sbjct: 1225 KNISNLSGGEKTLSSLALVFALHNYKPTPLYVMDEIDAALDFKNVSIVANYIKE---RTK 1281
Query: 355 RTGFVV 338
F+V
Sbjct: 1282 NAQFIV 1287
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 33.5 bits (73), Expect = 0.036
Identities = 15/22 (68%), Positives = 19/22 (86%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNL 707
L+L+GE GTGKTT I++LAG L
Sbjct: 470 LLLVGETGTGKTTTIQLLAGLL 491
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 799 LESSQILRFLVLLGENGTGKTTFIRMLA 716
L + Q+L+ ++L G G GKT+ I LA
Sbjct: 1553 LRALQVLKPILLEGSPGVGKTSLITALA 1580
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 32.3 bits (70), Expect = 0.084
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEGS 689
+ L+G NG GKTT I+++ ++P GS
Sbjct: 623 VALVGPNGAGKTTLIKLILEKVQPSTGS 650
Score = 31.1 bits (67), Expect = 0.19
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = -1
Query: 538 EEIMDQEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE 407
+E++ + LSGG R+AL L + ++DEP+ +LD E
Sbjct: 411 DEMIAKRTNELSGGWRMRIALARILFIKPTLMMLDEPTNHLDLE 454
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKIS 641
L+ NG+GK+T + +A L P S L Y P +++
Sbjct: 306 LIAPNGSGKSTLLHAIACGLIPTPSSLDFYLLDREYIPNELT 347
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 32.3 bits (70), Expect = 0.084
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -1
Query: 487 RVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFI-LHAKRTGF---VVEHD 329
R+AL CLG + +DEP+ LD E AK + R + K+ F V+ HD
Sbjct: 1195 RLALAECLGVNCGILALDEPTTNLDEENICSLAKNLSRIVEFRRKQANFQLIVITHD 1251
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 796 ESSQILRFLVLL-GENGTGKTTFIRML 719
ES Q L L+ G+NG+GKTT I L
Sbjct: 21 ESIQFFSPLTLIVGQNGSGKTTIIECL 47
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1465
Score = 31.9 bits (69), Expect = 0.11
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = -1
Query: 523 QEVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGF 344
Q+ +LSGG+ R++L + AD+YL+D+ + +D V+ +IK GF
Sbjct: 699 QKGASLSGGQKSRISLARAIYSQADIYLLDDVLSSVDQH---VSRDLIKNLF---GPEGF 752
Query: 343 VVEHDFIMAT 314
+ H ++ T
Sbjct: 753 LRTHCVVLTT 762
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 31.9 bits (69), Expect = 0.11
Identities = 37/163 (22%), Positives = 63/163 (38%), Gaps = 28/163 (17%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPD----------EGSGQLPQLHISYKPQKISPKSQGLVR 617
++G G+G+TTF+R + G+ P +G P I K S + +
Sbjct: 35 IIGNTGSGRTTFLRCIQGSFTPSPSTSFSYPFLKGKSDSPWQAIQLLDFKSSGQQRAAYY 94
Query: 616 SLLHDKIRD-------------AY-----IHPQFLTDVMKPMKIEEIMDQEVQNLSGGEL 491
S + RD AY Q + + ++ ++ + NLS G+
Sbjct: 95 SERYHSFRDKEHDTTLEKWLLGAYRGNEKFASQHVQEAASMTQLSHLLPSSLINLSNGQS 154
Query: 490 QRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILH 362
+R L L + + L+DEP A LD R V + ++ H
Sbjct: 155 RRAMLASKLVQRPQLLLLDEPYAGLDVTSRSVLSSLLGEMSNH 197
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 31.9 bits (69), Expect = 0.11
Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
Frame = -1
Query: 772 LVLLGENGTGKTTFI-RMLAGNLE 704
LVL+G+ GTGKTTF+ R L G E
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEFE 35
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 30.3 bits (65), Expect = 0.34
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = -1
Query: 511 NLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIK 377
NLS G+ Q + L L P V L+DE +A +D E + + I+
Sbjct: 1360 NLSSGQRQLMCLTRALLTPTRVLLLDEATAAVDVETDAIVQRTIR 1404
Score = 29.5 bits (63), Expect = 0.59
Identities = 29/125 (23%), Positives = 61/125 (48%), Gaps = 7/125 (5%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDA 587
++G+ G GK++ + GN++ GS I+Y Q+ + + ++L D
Sbjct: 614 IVGKVGMGKSSLLEACLGNMQKHSGS-VFRCGSIAYAAQQPWILNATIQENILFGLELDP 672
Query: 586 YIHPQFLTD--VMKPMKIEEIMDQ-EVQ----NLSGGELQRVALVLCLGKPADVYLIDEP 428
+ + + +++ +I DQ EV +LSGG+ R++L + +D+YL+D+
Sbjct: 673 EFYEKTIRACCLLRDFEILADGDQTEVGEKGISLSGGQKARISLARAVYSRSDIYLLDDI 732
Query: 427 SAYLD 413
+ +D
Sbjct: 733 LSAVD 737
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -1
Query: 766 LLGENGTGKTTFIRMLAGNLEPDEGSGQLPQLHIS 662
++G G GK+T L +EP G QL ++I+
Sbjct: 1256 IVGRTGAGKSTLTLALFRLIEPTSGDIQLDDINIT 1290
>SPAC8C9.17c |spc34||DASH complex subunit Spc34|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 164
Score = 29.1 bits (62), Expect = 0.78
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Frame = -1
Query: 601 KIRDAYIHPQFLTDVMKPMKIEEIMDQEVQNLSGGELQRVA------LVLCLGKPADVYL 440
+ DA +H +TD+++ + EE++ E ++L +R+A V C+ + D+Y
Sbjct: 28 RFTDAVLHTHAITDLIRDTQKEELIAAEFKSLPKDWSERLASENPADYVACIEELLDIYP 87
Query: 439 IDEPSAYLDS 410
+ YL++
Sbjct: 88 MQGGREYLET 97
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 0.78
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +3
Query: 273 EGVPSNTITRSARYVAIIKSCSTTKPVRLAWRMNLLITL 389
E +P N +R +YVAI K +T+ P R+ + +L L
Sbjct: 112 EKIPVNEDSRKPKYVAIKKIYATSSPARIYNELEILYLL 150
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 28.7 bits (61), Expect = 1.0
Identities = 13/27 (48%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRML-AGNLEPDE 695
++L G +GTGKTTF L A +L+P++
Sbjct: 33 IMLCGASGTGKTTFFNTLFATSLQPEK 59
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 28.7 bits (61), Expect = 1.0
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 10/129 (7%)
Frame = -1
Query: 769 VLLGENGTGKTTFIRMLAGNLEPDEG----SGQLPQLHISYKPQKISPKSQGLVRSLLHD 602
+L+G NG GK+T +++L+G G G+ P S + ++ + ++H
Sbjct: 34 LLVGANGAGKSTLLKLLSGKSLAKAGHISVGGKDPFRESS--SAFVYLGTEWVNNPVIHR 91
Query: 601 KIRDAYIHPQFLTDVMKPMK--IEEIMDQEVQ----NLSGGELQRVALVLCLGKPADVYL 440
+ A + D + + I+D +++ +S GE +RV L + L +P +V L
Sbjct: 92 DMSVARLIASVGGDKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLL 151
Query: 439 IDEPSAYLD 413
+DE + LD
Sbjct: 152 LDEVTVDLD 160
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 28.7 bits (61), Expect = 1.0
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Frame = -1
Query: 778 RFLVLLGENGTGKTTFIRMLAGNLEPDEGSGQLP----------QLHISYKPQKISPKSQ 629
+ L+GE+G GKTT + +LA ++ +G + Q Y Q+ +
Sbjct: 912 KLTALMGESGAGKTTLLNVLAQRVDTGVVTGDMLVNGRGLDSTFQRRTGYVQQQDVHIGE 971
Query: 628 GLVRSLLH--DKIRDAYIHP-----QFLTDVMKPMKIEEIMDQEVQNLSGG----ELQRV 482
VR L +R P +++ V+K +++E + + G + +R
Sbjct: 972 STVREALRFSAALRQPASVPLSEKYEYVESVIKLLEMESYAEAIIGTPGSGLNVEQRKRA 1031
Query: 481 AL-VLCLGKPADVYLIDEPSAYLDSE 407
+ V KPA + +DEP++ LDS+
Sbjct: 1032 TIGVELAAKPALLLFLDEPTSGLDSQ 1057
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 28.3 bits (60), Expect = 1.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 778 RFLVLLGENGTGKTTFIRMLAGNLEPD 698
R +L G G+GKT+F+ LAG L+ D
Sbjct: 243 RGYLLYGPPGSGKTSFLYALAGELDYD 269
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEPDEGSGQLPQ 674
L + G GTGKT + + NL+ GQLP+
Sbjct: 364 LYISGTPGTGKTATVHEVIWNLQELSREGQLPE 396
>SPAC637.08 |||iron-sulfur cluster assembly ATPase
Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -1
Query: 778 RFLVLLGENGTGKTTFIRMLAGNLEPDE 695
+ LVL G+ G GK+TF LA L +E
Sbjct: 62 KILVLSGKGGVGKSTFSSQLAWGLSLEE 89
>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 3071
Score = 27.9 bits (59), Expect = 1.8
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Frame = -1
Query: 439 IDEPSAYLDSE*---RLVAAKVIKRFILHAKRTGFVVEHDFIMATY 311
ID S LDS R A V+ IL+ + TGF +DFI AT+
Sbjct: 965 IDYDSPELDSVYEGVRTTIAVVLSDLILNVEPTGFSFVYDFIRATF 1010
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.9 bits (59), Expect = 1.8
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = -1
Query: 799 LESSQILRFLVLLGENGTGKTTFI 728
LE+ + LVLLGE G+GKTT I
Sbjct: 520 LEAVSKNQILVLLGETGSGKTTQI 543
>SPAC19A8.11c |||recombination protein Irc6 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 246
Score = 26.2 bits (55), Expect = 5.5
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = -1
Query: 781 LRFLVLLGENGTGKTTFIRMLAGNL 707
+R ++++G + +GK FI+ L G+L
Sbjct: 1 MRVILVIGRSNSGKLDFIKALTGSL 25
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 26.2 bits (55), Expect = 5.5
Identities = 32/142 (22%), Positives = 62/142 (43%), Gaps = 10/142 (7%)
Frame = -1
Query: 706 EPDEGSGQLPQLHISYKPQKISPKSQGLVRSLLHDKIRDAYIHPQFLTD------VMKPM 545
+ +E SG+ + + + +P+ +P S V +D Y H L D V+ P
Sbjct: 40 DDEEYSGRTRRRNRNTRPRVSAPSSSSTVVP------KDLYSHRATLEDDELNFGVVDPE 93
Query: 544 KIEEIMDQEVQNLSGGELQRVALVLCLGKPADVYLID-EPS---AYLDSE*RLVAAKVIK 377
+++ E+ L+GG R CLG+ +Y++ EP+ Y DS + + +
Sbjct: 94 GEKKV--NELGYLNGGREYRCRTFTCLGRGNRLYMLSTEPARAMGYRDSYLLFLKHRSLH 151
Query: 376 RFILHAKRTGFVVEHDFIMATY 311
+ I+ ++E + I +Y
Sbjct: 152 KIIVDDSEKWDLIERNIIPHSY 173
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLA 716
++L G GTGKTT R++A
Sbjct: 123 MILWGSAGTGKTTLARLIA 141
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 7.3
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRML 719
L+L GE+G GKTTF L
Sbjct: 31 LMLCGESGLGKTTFCNTL 48
>SPBC530.13 |||cyclin Ctk2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = -1
Query: 277 PSSNATAHAPQSLLNGMNKFLELLGITFR-RDPNNFRPRINK 155
P S AH+ + +L LEL+ FR R P+N+ + K
Sbjct: 114 PGSEVDAHSQKRILGLERMTLELICFDFRVRHPHNYMVKFAK 155
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,325,812
Number of Sequences: 5004
Number of extensions: 68333
Number of successful extensions: 262
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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