Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c06
(811 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein. 35 0.003
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein. 31 0.032
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein. 31 0.042
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein. 29 0.22
U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette... 28 0.30
U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette... 28 0.30
U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette... 28 0.30
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 25 2.1
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 25 2.8
AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein p... 24 6.4
DQ182015-1|ABA56307.1| 353|Anopheles gambiae G(alpha)q2 protein. 23 8.4
>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
Length = 1376
Score = 35.1 bits (77), Expect = 0.003
Identities = 27/79 (34%), Positives = 42/79 (53%), Gaps = 10/79 (12%)
Frame = -1
Query: 517 VQNLSGGE--LQRVALVLCLG--KPADVYLIDEPSAYLDSE*RLVAAKVIK------RFI 368
+ NLSGGE L +ALV L KP+ +Y++DE A LD + + A IK +FI
Sbjct: 1184 ISNLSGGEKTLSSLALVFALHYYKPSPLYVMDEIDAALDFKNVSIVAHYIKERTKNAQFI 1243
Query: 367 LHAKRTGFVVEHDFIMATY 311
+ + R+ D+++ Y
Sbjct: 1244 IISLRSNMFELSDYLVGIY 1262
>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
Length = 1187
Score = 31.5 bits (68), Expect = 0.032
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = -1
Query: 523 QEVQNLSGGELQRVALVLCLG----KPADVYLIDEPSAYLD 413
+ + LSGG+ VAL L L KPA +Y++DE A LD
Sbjct: 1078 ESLTELSGGQRSLVALSLILAMLKYKPAPLYILDEVDAALD 1118
>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
Length = 1201
Score = 31.1 bits (67), Expect = 0.042
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -1
Query: 523 QEVQNLSGGELQRVALVLCLG----KPADVYLIDEPSAYLDSE*RLVAAKVI 380
+E+ LSGG+ VAL L PA YL DE LD++ R A +I
Sbjct: 1094 REMNQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDQALDAQHRSAVADMI 1145
>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
Length = 1229
Score = 28.7 bits (61), Expect = 0.22
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -1
Query: 523 QEVQNLSGGELQRVALVLCLG----KPADVYLIDEPSAYLDS 410
Q + NLSGGE AL L +PA +++DE A LD+
Sbjct: 1123 QPMSNLSGGEKTIAALALLFAIHSFQPAPFFVLDEIDAALDN 1164
Score = 23.8 bits (49), Expect = 6.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -1
Query: 778 RFLVLLGENGTGKTTFI 728
RF ++G NG+GK+ F+
Sbjct: 32 RFSAVIGPNGSGKSNFM 48
>U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 28.3 bits (60), Expect = 0.30
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 517 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVV 338
++ LSGGE +R+A + L DEP++ LDS +V+K + K +
Sbjct: 241 IKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTI 300
Query: 337 EHDFIMATYLADRV-IVFEG 281
L D++ +V EG
Sbjct: 301 HQPSSELYCLFDKILLVAEG 320
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEP 701
L ++G +G GKTT + LA P
Sbjct: 129 LAVMGSSGAGKTTLLNALAFRSPP 152
>U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 28.3 bits (60), Expect = 0.30
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 517 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVV 338
++ LSGGE +R+A + L DEP++ LDS +V+K + K +
Sbjct: 241 IKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTI 300
Query: 337 EHDFIMATYLADRV-IVFEG 281
L D++ +V EG
Sbjct: 301 HQPSSELYCLFDKILLVAEG 320
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEP 701
L ++G +G GKTT + LA P
Sbjct: 129 LAVMGSSGAGKTTLLNALAFRSPP 152
>U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 673
Score = 28.3 bits (60), Expect = 0.30
Identities = 22/80 (27%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Frame = -1
Query: 517 VQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSE*RLVAAKVIKRFILHAKRTGFVV 338
++ LSGGE +R+A + L DEP++ LDS +V+K + K +
Sbjct: 219 IKGLSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHSVLQVLKGMAMKGKTIILTI 278
Query: 337 EHDFIMATYLADRV-IVFEG 281
L D++ +V EG
Sbjct: 279 HQPSSELYCLFDKILLVAEG 298
Score = 24.6 bits (51), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRMLAGNLEP 701
L ++G +G GKTT + LA P
Sbjct: 107 LAVMGSSGAGKTTLLNALAFRSPP 130
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 25.4 bits (53), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 291 TITRSARYVAI-IKSCSTTKPVRLAWRMNLLITLA 392
T R+ R + I CSTT RL WR++ +TL+
Sbjct: 157 TFNRNKRTSIVDITFCSTTLSERLNWRVSDALTLS 191
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 25.0 bits (52), Expect = 2.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 283 GTPSSNATAHAPQSLLNGMNKFLELL 206
G P +++ P +LNG+ K LE L
Sbjct: 501 GKPPGESSSFRPLGMLNGLGKVLERL 526
>AB097148-2|BAC82628.1| 1077|Anopheles gambiae pol-like protein
protein.
Length = 1077
Score = 23.8 bits (49), Expect = 6.4
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = +2
Query: 515 DFLVHNFFNFHWLHHISE 568
D L+H+F WLH + +
Sbjct: 764 DLLIHHFRQLVWLHRVRD 781
>DQ182015-1|ABA56307.1| 353|Anopheles gambiae G(alpha)q2 protein.
Length = 353
Score = 23.4 bits (48), Expect = 8.4
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = -1
Query: 772 LVLLGENGTGKTTFIRML 719
L+LLG +GK+TFI+ +
Sbjct: 36 LLLLGTGESGKSTFIKQM 53
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 818,995
Number of Sequences: 2352
Number of extensions: 17017
Number of successful extensions: 39
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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