Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14c05
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||M...    30   0.31 
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    30   0.31 
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    29   0.54 
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.95 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    28   1.7  
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|...    28   1.7  
SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces pom...    24   1.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    27   3.8  
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz...    26   5.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    26   5.1  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    26   6.7  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    26   6.7  
SPAC30.02c |||RNA polymerase II elongator complex subunit|Schizo...    26   6.7  
SPBC3B9.21 |dcp1||mRNA decapping complex subunit Dcp1|Schizosacc...    25   8.9  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   8.9  
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ...    25   8.9  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    25   8.9  

>SPBC27.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1052

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 16/64 (25%), Positives = 31/64 (48%)
 Frame = -3

Query: 472  NYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEERLTIA 293
            N   +DNI + N++E ++ +  ED S+H  +   T +V         + S +N+    + 
Sbjct: 967  NSTENDNITTENSSEIVQVIHTEDDSLHFDDNVSTDSVSLGNKSRISMDSMRNDCEAFLP 1026

Query: 292  KKNE 281
            KK +
Sbjct: 1027 KKEK 1030


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 30.3 bits (65), Expect = 0.31
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
 Frame = -3

Query: 463 YHDNIASNNNAENLKKVKKEDGSMHIV---EQYLTQNVDNVKGHNFIVLSFKNEERLTIA 293
           Y  +I    N +N+ + +K++G  + +   E  L + V     H F++   K  E     
Sbjct: 31  YVKSIKETFNFDNVSEEEKQEGGDYYLGKKEDELDEVVLRPNPHRFVLFPIKYHEIWQFY 90

Query: 292 KKNEEFYWISGEI 254
           KK E  +W + EI
Sbjct: 91  KKAEASFWTAEEI 103


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.54
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
 Frame = -3

Query: 574 NPPNKYVVDNLNLIVNKKSTLTYKYSSVANLL------FNNYKYHDNIASNNNAENLKKV 413
           NP N    + + ++ ++KS +TY +      +       NN +Y   + +N+ +      
Sbjct: 218 NPANFNETEQITIVSDEKSEVTYSHVQTRGSVPAFWAEVNNLRYKPLMVANSASMAAAAA 277

Query: 412 KKE-DGSMHIVEQYLTQNVDNVKGH 341
           KK  D  + I    +  N+ N KGH
Sbjct: 278 KKHFDEQISIYGDQVVVNLVNCKGH 302


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 0.95
 Identities = 20/78 (25%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
 Frame = +2

Query: 149 IVQCSALSSVHFTDYKHVMLKSIIFLNYLTSVYIFNLARNPIKLFVFLS-YSQPLFVFER 325
           +VQ +A+    FT ++  +  SI  + ++ S Y F L R  I +    + +S   ++F  
Sbjct: 125 LVQGAAMKIFSFT-FQTALPISIAIIWHVISTYGFALYRQRIVVGKHAAHFSLDHWIFVV 183

Query: 326 QYYKIVTFYIIHILSQIL 379
           +YY  + FY+ +++   L
Sbjct: 184 EYYAPIVFYVFNLMGFFL 201


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
 Frame = -3

Query: 460 HDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIV-LSFKNEERLTIAKKN 284
           +D +     A  +++ K++D    +  + L + +  VK + F +    KN +++++    
Sbjct: 37  YDTVVVIEGAPVVEEAKQQDFFRFLSSKVLAK-IGKVKENGFYMPFEEKNGKKMSLGLVF 95

Query: 283 EEFYWISGE---IKDVDASQVIQKYNRFKHHMFVISKVNRRE 167
            +F  + G    ++++D  Q++      K+H FV+ K+N+ E
Sbjct: 96  ADFENVDGADLCVQELDGKQIL------KNHTFVVRKLNQLE 131


>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1372

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 4/76 (5%)
 Frame = -3

Query: 610  ILKYSESVKFPDNPPNKY-VVDNLNLIV---NKKSTLTYKYSSVANLLFNNYKYHDNIAS 443
            +L Y E+   PD P +     +NLN I+    K ST+  K      L F   +       
Sbjct: 1225 LLMYGEN---PDEPTSSARFFNNLNEIILEYKKASTVNQKMEKEEELAFLRLQALKASVK 1281

Query: 442  NNNAENLKKVKKEDGS 395
            +NNAEN    K E+ S
Sbjct: 1282 SNNAENSGSSKNEEVS 1297


>SPBC19G7.07c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 687

 Score = 24.2 bits (50), Expect(2) = 1.8
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 523 KSTLTYKYSSVANLLFNNYKY 461
           K TLTY Y+    LLFN++++
Sbjct: 568 KITLTYIYAIKLALLFNDFEF 588



 Score = 21.8 bits (44), Expect(2) = 1.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 586 KFPDNPPNKYVVDNLNLIVNKKSTLTYK 503
           KFP+   ++ V D LN+ + + S   +K
Sbjct: 519 KFPEALNSRLVTDFLNIFLERGSVQLFK 546


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +2

Query: 233 LTSVYIFNLARNPIKLFVFLSYSQPLFVFERQYYKIVTFYIIHILSQILFDNV-HAAVLL 409
           +T + I    RN  +L+   S  QPL  F+R    +  F+ + I S++  D + HA ++ 
Sbjct: 378 ITIMVIIIFLRNLAELYTTSSLDQPLLTFKRLKTLLAPFFWV-IGSELFVDWLKHAFIIK 436

Query: 410 LN 415
            N
Sbjct: 437 FN 438


>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
           S9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 191

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 557 IFVWGIVGKLYTFRIL*YLTHIRRYKKIIRCSLNFITLFTTKH 685
           +F  G+   ++  R+L +  HIR  K+I+      + L T KH
Sbjct: 113 VFKLGLAKSIHHARVLIFQRHIRVGKQIVNVPSFVVRLDTQKH 155


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = -3

Query: 676 RKESNEIETASNNFFVSPYV--SQILKYSESVKFPDNPPNKYVVDNLNLIVNKKSTLTYK 503
           R+   ++  +S +F  S YV   QI + S+++K     P K V +   L       L+Y 
Sbjct: 90  RRRHKKVSPSSGSFVASDYVVLQQIAQSSKTLK--QTEPEKPVNEEETLAALLAPALSYP 147

Query: 502 YSSVANLL 479
            S  +NL+
Sbjct: 148 KSGKSNLI 155


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/96 (20%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
 Frame = -3

Query: 505 KYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQY-----LTQNVDNVKGH 341
           +  S+A+L    +K   ++    N   +KK++    ++  ++ Y       +N+DNVK  
Sbjct: 49  RIQSMASLGLERFKNLQSLCLRQN--QIKKIESVPETLTELDLYDNLIVRIENLDNVKNL 106

Query: 340 NFIVLSFKNEE---RLTIAKKNEEFYWISGEIKDVD 242
            ++ LSF N +    +   K  E  +++   I+ ++
Sbjct: 107 TYLDLSFNNIKTIRNINHLKGLENLFFVQNRIRRIE 142


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -3

Query: 349 KGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYN 215
           +GH  ++     +E +  AKK  E ++  GE   +D SQ  +KY+
Sbjct: 523 EGHQVMIFVHSRKETINSAKKLREQFFHEGEADLLDNSQ-HEKYS 566


>SPAC30.02c |||RNA polymerase II elongator complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 281

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = -3

Query: 385 VEQYLTQNVDNVKGHNFIVLSFKNEERLTIAKK 287
           +E  + QN+DN K +  I++   N+E L I K+
Sbjct: 25  LEDRIHQNIDNTKDYRVIII---NDESLNIEKE 54


>SPBC3B9.21 |dcp1||mRNA decapping complex subunit
           Dcp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = -3

Query: 451 IASNNNAENLKKVKKEDGSMHIVEQYLTQNVDN 353
           I + N+ ENL        ++H+V++YL    +N
Sbjct: 68  ILNRNSPENLYLFINHPSNVHLVDRYLIHRTEN 100


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 21/113 (18%), Positives = 48/113 (42%)
 Frame = -3

Query: 553 VDNLNLIVNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQY 374
           V  LN  +++            N + N ++Y DN        +L++  +    +   E+ 
Sbjct: 561 VSELNGTIDEYRNKLKDKEETYNEVMNAFQYKDN--------DLRRFHESINKLQDREKE 612

Query: 373 LTQNVDNVKGHNFIVLSFKNEERLTIAKKNEEFYWISGEIKDVDASQVIQKYN 215
           LT N++     N ++ S +    +   ++     ++SG  KD+D + +++  N
Sbjct: 613 LTSNLEK---KNLVISSLRETVAMLEKERESIKKYLSGNAKDLDNTNLMEILN 662


>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 780

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 688 IMLSRKESNEIETASNNFFVSPYVSQIL 605
           ++ S  ES  +E +S N  V+PYVS++L
Sbjct: 749 MLFSAIESRVLEVSSLNPAVAPYVSEML 776


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 13/51 (25%), Positives = 24/51 (47%)
 Frame = -3

Query: 532 VNKKSTLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVE 380
           VNK +    K   V+N    N    D+IAS++  E+   ++     +H ++
Sbjct: 509 VNKLAASALKAQLVSNETLQNVPLEDSIASSSAYEDTDSIESSTPVVHPID 559


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,731,565
Number of Sequences: 5004
Number of extensions: 54086
Number of successful extensions: 207
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)