Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c05
(759 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0370 + 15030829-15030837,15031579-15031957,15033434-150336... 29 3.0
10_07_0079 + 12665141-12665167,12665613-12665702,12665783-126663... 29 4.0
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 28 7.0
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 28 7.0
06_03_0499 + 21461608-21463427,21463517-21463627,21463867-214641... 28 9.3
04_03_0381 - 15163425-15164903 28 9.3
04_03_0380 - 15150814-15152304 28 9.3
04_03_0369 + 15012906-15014417 28 9.3
04_03_0348 + 14735581-14737071 28 9.3
04_03_0347 + 14723118-14724548 28 9.3
04_03_0323 - 14364145-14365656 28 9.3
>04_03_0370 +
15030829-15030837,15031579-15031957,15033434-15033626,
15033859-15034102,15035383-15035445
Length = 295
Score = 29.5 bits (63), Expect = 3.0
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ + FAEQ+ NC+YK+ E+
Sbjct: 32 VPMLSWLFFAEQQTNCRYKQTEW 54
>10_07_0079 +
12665141-12665167,12665613-12665702,12665783-12666310,
12666341-12667741
Length = 681
Score = 29.1 bits (62), Expect = 4.0
Identities = 14/28 (50%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +2
Query: 608 YLTHIR-RYKKIIRCSLNFITLFTTKHN 688
YL H+ R+ KI+ CSLN + L +TKH+
Sbjct: 608 YLRHLTLRHLKIV-CSLNLLRLMSTKHD 634
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 28.3 bits (60), Expect = 7.0
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = -3
Query: 460 HDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGHNFIVLSFKNEE 308
H+ +ASN +++K KKEDG H+V +T D + G N + + ++
Sbjct: 2615 HNVLASNLGLDDVKITKKEDG--HMV---MTSGSDTMSGLNLLTYDTERKD 2660
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 28.3 bits (60), Expect = 7.0
Identities = 24/91 (26%), Positives = 40/91 (43%)
Frame = -3
Query: 520 STLTYKYSSVANLLFNNYKYHDNIASNNNAENLKKVKKEDGSMHIVEQYLTQNVDNVKGH 341
S T Y V NLL + H+ S++ KVK+ ++ + + Q+ N G
Sbjct: 522 SQFTASYGMVLNLLAGSKVTHNQKESDDI-----KVKRSGRTLEEARKLVEQSFGNYVGS 576
Query: 340 NFIVLSFKNEERLTIAKKNEEFYWISGEIKD 248
N +V + + ER+ E ++S EI D
Sbjct: 577 NVMVAAKEELERI-----QSEIQYLSSEITD 602
>06_03_0499 + 21461608-21463427,21463517-21463627,21463867-21464143,
21464265-21464353,21464508-21464595,21464698-21464907,
21464985-21465110,21465429-21465620,21466532-21467188
Length = 1189
Score = 27.9 bits (59), Expect = 9.3
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 548 VHHIFVWGIVGKLYTFRIL 604
+ H+FVWG VG Y F I+
Sbjct: 1055 IQHLFVWGSVGTWYLFIIV 1073
>04_03_0381 - 15163425-15164903
Length = 492
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ FAEQ+ NC+YK+ E+
Sbjct: 392 VPMLSWPFFAEQQTNCRYKRTEW 414
>04_03_0380 - 15150814-15152304
Length = 496
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0369 + 15012906-15014417
Length = 503
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ FAEQ+ NC+YK+ E+
Sbjct: 402 VPMLSWPFFAEQQTNCRYKRTEW 424
>04_03_0348 + 14735581-14737071
Length = 496
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ FAEQ+ NC+YK+ E+
Sbjct: 398 VPMLSWPFFAEQQTNCRYKRTEW 420
>04_03_0347 + 14723118-14724548
Length = 476
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ FAEQ+ NC+YK+ E+
Sbjct: 376 VPMLSWPFFAEQQTNCRYKRTEW 398
>04_03_0323 - 14364145-14365656
Length = 503
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = -3
Query: 109 VPLSDAITFAEQKLNCKYKKIEF 41
VP+ FAEQ+ NC+YK+ E+
Sbjct: 402 VPMLSWPFFAEQQTNCRYKRTEW 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,610,125
Number of Sequences: 37544
Number of extensions: 270675
Number of successful extensions: 667
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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