Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc14c02
(844 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AM292359-1|CAL23171.2| 436|Tribolium castaneum gustatory recept... 24 1.7
AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger tran... 23 2.3
AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor ... 22 5.3
EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetyla... 22 7.0
EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetyla... 22 7.0
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 22 7.0
AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein. 22 7.0
AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein. 22 7.0
U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein. 21 9.2
EF592536-1|ABQ95982.1| 598|Tribolium castaneum beta-N-acetylglu... 21 9.2
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro... 21 9.2
AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain tran... 21 9.2
>AM292359-1|CAL23171.2| 436|Tribolium castaneum gustatory receptor
candidate 38 protein.
Length = 436
Score = 23.8 bits (49), Expect = 1.7
Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 494 LSCRRMY-THHTLLVYRVVAMIIQCVLSCL 580
L+C M TH T+ ++++ ++ C ++CL
Sbjct: 195 LACGVMVVTHITMAHFKIIQVVPYCYINCL 224
Score = 23.4 bits (48), Expect = 2.3
Identities = 12/53 (22%), Positives = 25/53 (47%)
Frame = -1
Query: 163 LNDDITSEPQQFSEPVYKMPIDDMMVGYNNTTSNVSAGIIILISVVAFIALFL 5
+ND+ E F + P D +VG+ + N+ +L ++V ++ + L
Sbjct: 362 MNDEAQQEINMFLKATEMSPTDISLVGFFDVNRNLFKS--LLATMVTYLVVLL 412
>AJ621748-1|CAF21851.1| 228|Tribolium castaneum zinc finger
transcription factor protein.
Length = 228
Score = 23.4 bits (48), Expect = 2.3
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = -3
Query: 320 NAASISNCVSSKPNHFCCINFC*QISCKHEFGRAILSVGQPRKG 189
N +SIS C K N C IN + +CK R L VG + G
Sbjct: 35 NISSISEC---KNNGECVINKKNRTACKACRLRKCLLVGMSKSG 75
>AJ005083-1|CAB65469.1| 585|Tribolium castaneum signal receptor
protein protein.
Length = 585
Score = 22.2 bits (45), Expect = 5.3
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 498 PAAECTRTTPCW 533
P A CT +T CW
Sbjct: 524 PWANCTASTRCW 535
>EU019713-1|ABU25225.1| 528|Tribolium castaneum chitin deacetylase
2B protein.
Length = 528
Score = 21.8 bits (44), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 726 SFDQKRLPG*LDRIGVPKRNSKTFYFSTN 640
S D R+PG L+ VP+ + TF + N
Sbjct: 168 SADGTRIPGQLEPANVPQMITLTFNGAVN 196
>EU019712-1|ABU25224.1| 535|Tribolium castaneum chitin deacetylase
2A protein.
Length = 535
Score = 21.8 bits (44), Expect = 7.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = -2
Query: 726 SFDQKRLPG*LDRIGVPKRNSKTFYFSTN 640
S D R+PG L+ VP+ + TF + N
Sbjct: 175 SADGTRIPGQLEPANVPQMITLTFNGAVN 203
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 21.8 bits (44), Expect = 7.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Frame = +3
Query: 339 PCGRRFCSRTRSRCDTRAVNWLRCANTWRL 428
PC FC ++C T + C + +L
Sbjct: 692 PCTTCFCENGNNKCFTMECPQVTCPDNMKL 721
>AY800247-1|AAV66724.1| 790|Tribolium castaneum pangolin protein.
Length = 790
Score = 21.8 bits (44), Expect = 7.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 505 QNVHAPHLVGVQSRRHDY 558
+N H PH + +SRR Y
Sbjct: 600 RNFHGPHRLAARSRRCCY 617
>AY800246-1|AAV66723.1| 682|Tribolium castaneum pangolin protein.
Length = 682
Score = 21.8 bits (44), Expect = 7.0
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 505 QNVHAPHLVGVQSRRHDY 558
+N H PH + +SRR Y
Sbjct: 492 RNFHGPHRLAARSRRCCY 509
>U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein.
Length = 322
Score = 21.4 bits (43), Expect = 9.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 159 TMISPANRNNLASPFTK 109
T ++ ANRN+ A P T+
Sbjct: 263 TSMNDANRNDCAKPLTQ 279
>EF592536-1|ABQ95982.1| 598|Tribolium castaneum
beta-N-acetylglucosaminidase NAG1 protein.
Length = 598
Score = 21.4 bits (43), Expect = 9.2
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = -1
Query: 136 QQFSEPVYKMPIDDMMVGYNNTTSNV 59
+QF P++ M D++ +G N+T ++
Sbjct: 353 KQFKPPLFHMGGDEVHLGCWNSTPSI 378
>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
Length = 2700
Score = 21.4 bits (43), Expect = 9.2
Identities = 10/37 (27%), Positives = 18/37 (48%)
Frame = +1
Query: 172 STGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQQKWF 282
S+ +PP + T S+ P S +++C F W+
Sbjct: 1801 SSTVVPPPQHSTTQSLVDPKSEFKVVC--YFTNWAWY 1835
>AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain
transcription factor Fushitarazu protein.
Length = 290
Score = 21.4 bits (43), Expect = 9.2
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -2
Query: 159 TMISPANRNNLASPFTK 109
T ++ ANRN+ A P T+
Sbjct: 263 TSMNDANRNDCAKPLTQ 279
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,393
Number of Sequences: 336
Number of extensions: 3690
Number of successful extensions: 18
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23244256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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