Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b24
         (721 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.         25   1.8  
AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like precu...    24   4.1  
AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.    24   4.1  
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    24   4.1  
AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.        24   5.4  
AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.        24   5.4  
AY341194-1|AAR13758.1|  294|Anopheles gambiae laminin protein.         23   7.2  
AY341193-1|AAR13757.1|  294|Anopheles gambiae laminin protein.         23   7.2  
AY341192-1|AAR13756.1|  294|Anopheles gambiae laminin protein.         23   7.2  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    23   7.2  

>AY578799-1|AAT07304.1|  679|Anopheles gambiae brinker protein.
          Length = 679

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 549 LPVHSTCGITSSSSHACNSTA*GSL 623
           +PV S   ++++SS +C+S+A GSL
Sbjct: 233 IPVSSCSPLSTASSASCSSSAAGSL 257


>AY994089-1|AAX86002.1|  267|Anopheles gambiae hyp37.7-like
           precursor protein.
          Length = 267

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +2

Query: 401 QSGVGGHQRIGKMYNFFVGLG 463
           Q+ +G  Q + ++YN+F G+G
Sbjct: 124 QNYIGHTQDVPRIYNYFAGVG 144


>AY534996-1|AAT07394.1|  471|Anopheles gambiae XK-related b protein.
          Length = 471

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = +2

Query: 89  VVLGFVLVSRQRFFNF------VKHVHGVGHIVAAKYHVGRTQAFNATVKT 223
           VVLG+ L  RQ+F  F      V     +  IV+ ++++ + +  NA+  T
Sbjct: 95  VVLGYALYERQKFAYFAAVIVIVSFSLVISQIVSIRWYLNKRKIRNASAST 145


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 24.2 bits (50), Expect = 4.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 508 IEELNKKLAFASESLAEANE 449
           IEELNKK+    +++ EA E
Sbjct: 743 IEELNKKIETLQKTIVEARE 762


>AY017417-1|AAG54081.1|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 238 RAQKRSLNRSIKRLGSSDVVFSSDYVPNA 152
           + Q +   R +K+LGS+ + F+ +  PNA
Sbjct: 95  KEQTKLQERLLKKLGSNAIPFTFNISPNA 123


>AJ304409-1|CAC39103.2|  383|Anopheles gambiae arrestin protein.
          Length = 383

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 238 RAQKRSLNRSIKRLGSSDVVFSSDYVPNA 152
           + Q +   R +K+LGS+ + F+ +  PNA
Sbjct: 95  KEQTKLQERLLKKLGSNAIPFTFNISPNA 123


>AY341194-1|AAR13758.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
           +AN    EA R    LAN+M D AQ +     N +L  +L
Sbjct: 160 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 199


>AY341193-1|AAR13757.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
           +AN    EA R    LAN+M D AQ +     N +L  +L
Sbjct: 160 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 199


>AY341192-1|AAR13756.1|  294|Anopheles gambiae laminin protein.
          Length = 294

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 397 QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
           +AN    EA R    LAN+M D AQ +     N +L  +L
Sbjct: 160 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 199


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
            precursor protein.
          Length = 1623

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -1

Query: 397  QANTMLNEARRETAQLANRMADIAQDVIAKPNNPQLLHSL 278
            +AN    EA R    LAN+M D AQ +     N +L  +L
Sbjct: 1299 EANQYNREADRIAEDLANKMRDHAQLLENVGTNIELAETL 1338


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,243
Number of Sequences: 2352
Number of extensions: 14713
Number of successful extensions: 43
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 73181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)