Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b20
         (395 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    29   0.26 
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    29   0.26 
SPCC1672.04c |||mitochondrial copper ion transport protein|Schiz...    25   4.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   7.4  

>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 299 IVXXDIXXXDDNADNSXKTKSNDRLNNENTSTDYD 195
           +   D    D++ DN     SN+  NN NT+TD D
Sbjct: 519 VANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDD 553


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 29.1 bits (62), Expect = 0.26
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 299 IVXXDIXXXDDNADNSXKTKSNDRLNNENTSTDYD 195
           +   D    D++ DN     SN+  NN NT+TD D
Sbjct: 519 VANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDD 553


>SPCC1672.04c |||mitochondrial copper ion transport
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 101

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 272 DDNADNSXKTKSNDRLNNENTST 204
           D+NA ++  + SND  NN N+S+
Sbjct: 71  DENATSTSLSSSNDGNNNSNSSS 93


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 309 GFARNPRIFQCIXFNVLFFERXSSFMH 389
           GF  N + F+ + F  LFFE    F +
Sbjct: 529 GFLTNIKPFEAVTFQKLFFEVGKGFSY 555


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,136,273
Number of Sequences: 5004
Number of extensions: 15445
Number of successful extensions: 50
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)