Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc14b20
         (395 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0077 - 585670-585787,585921-586687                               29   1.8  
04_04_1250 + 32077590-32078000,32078132-32078308,32078437-320785...    27   4.1  
01_06_1196 + 35322662-35324212                                         27   4.1  
04_04_0209 + 23607749-23607893,23607990-23608043,23608156-236084...    26   9.6  

>01_01_0077 - 585670-585787,585921-586687
          Length = 294

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 14/24 (58%), Positives = 15/24 (62%)
 Frame = -1

Query: 155 KRRVVAKRAFNXKSKKIPIGKCGV 84
           KR VVA+R FN    KI I  CGV
Sbjct: 264 KRAVVAERGFNRPYTKILITNCGV 287


>04_04_1250 +
           32077590-32078000,32078132-32078308,32078437-32078561,
           32078629-32078761,32078866-32079015,32079105-32079158,
           32079437-32079532,32080021-32080095,32080723-32080824,
           32080903-32081589,32081686-32081817,32081916-32082023,
           32082170-32082319
          Length = 799

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/48 (27%), Positives = 25/48 (52%)
 Frame = -1

Query: 272 DDNADNSXKTKSNDRLNNENTSTDYDXEXEEXVNTFNSRKRRVVAKRA 129
           DD++D   K+K++ R  N+   +DY  +      +  + K+   AK+A
Sbjct: 600 DDDSDQDDKSKNSSRKANKRKLSDYIGQLNAADASLRALKKLAGAKKA 647


>01_06_1196 + 35322662-35324212
          Length = 516

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 33  IMRWCVCVLF*SFTRRSNTTFADRNFFGFXIKRPL 137
           I ++ VC L+ ++  RS + FAD  FF   +  P+
Sbjct: 212 ISQYVVCNLYWAYRSRSRSEFADNFFFVLGVVAPV 246


>04_04_0209 +
          23607749-23607893,23607990-23608043,23608156-23608433,
          23609524-23609894,23610033-23610096,23610472-23610603
          Length = 347

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = +2

Query: 17 IFAGCHNAVVCLC 55
          +FAGC +A VCLC
Sbjct: 20 LFAGCSDASVCLC 32


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,080,498
Number of Sequences: 37544
Number of extensions: 92330
Number of successful extensions: 184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)